FC873539

Overview
NameFC873539
Unique NameFC873539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:221..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873539 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 52/142 (36.62%), Postives = 75/142 (52.82%), Query Frame = 3
Query:    9 TNGQCPLDVIQLSSPSERGDNLRLLPYDNYK-IVKVSTDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGVSTKDGVRRLLLVGDHE 419
            T   CP  V+Q  S  + G  +     D+   +V+VSTDVN+ F V +  + C+   +W++D+YD+      + T G +G PG  TL +WFKIEKAG       Y    CPSVC SC   C+ IG  + D  +  L + D+E
Sbjct:   65 TGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG----YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSDNE 201          
BLAST of FC873539 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15
Identity = 49/139 (35.25%), Postives = 73/139 (52.52%), Query Frame = 3
Query:   21 CPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSTDVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGVSTKDGVRRLLLVGD 413
            CP  V+Q     +    L   P +N K  +V+VSTD+N+ F    +  PC      +W++D YD+      +  GG +G+PG ET+ +WFKIE+   F   G Y +V CP+VC SC  +C  +G+      RR L + D
Sbjct:   76 CPPRVVQTRKEVDHDRPLAFFP-ENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSD 207          
The following BLAST results are available for this feature:
BLAST of FC873539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC2.027e-1636.6221 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU1.006e-1535.25Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BE03FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873539 ID=FC873539; Name=FC873539; organism=Citrus clementina; type=EST; length=661bp
ACCTAGGCACAAATGGACAGTGTCCCTTGGACGTTATCCAATTAAGTTCT
CCTAGCGAAAGGGGAGATAATTTAAGATTACTTCCGTACGACAATTACAA
AATTGTCAAGGTATCCACTGATGTCAACCTGAGATTCCCCGTAAAAGTTT
CTGTTAAGCCCTGTAATGAAGAACCATTGTGGAAAGTTGATAGCTATGAC
GATCCATTAATTGTAACCGGCGGAAGTGAGGGCCACCCAGGAGCTGAAAC
GTTGCTAAATTGGTTTAAGATTGAGAAAGCTGGAAATTTTTCATATGGTG
GTGTATACAATATTGTCCATTGTCCGAGTGTCTGTCTATCTTGTCCTAGA
CGCTGCAACAAAATTGGCGTTTCAACTAAGGATGGCGTTCGACGTCTGCT
TCTAGTTGGTGATCATGAACCGGCTTTGAATGTTCTGTTTTTTCCATCAG
AGGAAAGCTCAAGGCTACTTCAAGCTGCTAACGCAATATCAAGGTTTTTT
GAAGCTGCTGAAGCAATATCAATGACCGCGTAATGAATGAACTTAGCTGT
ATCATTCTAAATAATAGACCAGGCTAGTAACCTTTTATCTCTATTACAGA
ATAAAAATAACACCGCCTGTGATCCTTTTGCTGTTGTTAAAAAAAAAAAA
AAAAAAAAAAA
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