FC873544

Overview
NameFC873544
Unique NameFC873544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length850
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1232 contig Ccv1_Contig1232:2..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873544 vs. ExPASy Swiss-Prot
Match: SYP32_ARATH (Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.198e-15
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    7 DGESQPLLXXXXXXXXXXXXXMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIR 207
            +GES PLL             MVPLQD+YMQ RAEAL  VESTIHEL +IF QLAT+VSQQGEIAIR
Sbjct:  229 EGESSPLLQQSQQQQQQQQQQMVPLQDTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQGEIAIR 295
The following BLAST results are available for this feature:
BLAST of FC873544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYP32_ARATH1.198e-1565.67Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BE08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873544 ID=FC873544; Name=FC873544; organism=Citrus clementina; type=EST; length=850bp
AAGCAGGATGGGGAGAGTCAGCCATTATTGCAGCAGCAACAGCACCATCA
GCAACAACAGCAACAGCAGATGGTTCCATTGCAAGACAGTTACATGCAGA
GCAGAGCTGAAGCTCTTCAGAATGTAGAGTCTACCATCCATGAGCTGGGC
AACATCTTCAACCAGCTTGCGACCCTGGTCTCTCAGCAAGGGGAGATTGC
TATCAGGTATTATTTATTTTCTAGAAATAACTCGGTTGCTCTTTGCCAAA
CAATGCTTTATTCTGATCTTTCACATGCCTTGTAGATTATAGTTTTAAAT
AGTACTTTATATTCTAGGTTTGATATGTACCATGATTATGTATATACAGC
CATTAACAGATTGAATATAAGTTAATTTCCCAACTCGTGACTGAAGTTCA
ATTTATTAGTTTAAGATGGCTGAGAAAAGCTTAGGTAAGGCTTCTCACAC
AGATCTGGTAATGCGAATTTAGACATACTCAACTGAGTGTAGAGACAAAT
ATAGTTTTTCAAGAATTTTTGTGGAATAAGATGGGTAGCATATTTTTTTG
TGGTTAAAATTTTCACTGACAGCTTTAGGTAGTTGCTGCATAAATTTGAA
ATTCATGGGTGCCTCTATTACGTTAATGTGAAATGATATTGTCGACCGGA
GGGCATGATCATTTCCATTAATTGTCTTGTAAGTTTTGAAAAATTTAGTC
AACTCATAACAGTATGTTGAAACATTTTCAACCAATGCTCTCTTGCATCA
ACTGAAAGGATTCTACTTTGATGCGAGACAGTTGCTTGCATATATGTTCT
GCATGTGAACAATTTTTGTGATTGATGAGTGAAATGTATGTTGCAGGATT
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