FC873547

Overview
NameFC873547
Unique NameFC873547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1258 contig Ccv1_Contig1258:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873547 vs. ExPASy Swiss-Prot
Match: AAT5_ARATH (Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2)

HSP 1 Score: 410.994 bits (1055), Expect = 3.783e-114
Identity = 209/257 (81.32%), Postives = 226/257 (87.94%), Query Frame = 1
Query:   16 MASTMLSIASATPSASLSMHEKLKGKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 786
            MAS MLS+ S     SL   E  K K+KLG  T+++  F+K KSF RV+M  AV  SRFEG+TMAPPDPILGVSEAFKADT+  KLNLGVGAYRTEELQPYVL+VVKKAENLMLERG+NKEYLPIEGLAAFNK TAELLFGA + V+KEQRVAT+QGLSGTGSLRLAAALIERYFPGAKV+ISSPTWGNHKNIFNDA+VPWSEYRYYDPKT+GLDFEGMIADIK AP GSFILLHGCAHNPTGIDPTPEQW KIADV
Sbjct:    1 MASLMLSLGST----SLLPREINKDKLKLG--TSASNPFLKAKSFSRVTMTVAVKPSRFEGITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNKEYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKVVISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHNPTGIDPTPEQWVKIADV 251          
BLAST of FC873547 vs. ExPASy Swiss-Prot
Match: AATM_LUPAN (Aspartate aminotransferase P2, mitochondrial (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 5.113e-111
Identity = 204/256 (79.69%), Postives = 220/256 (85.94%), Query Frame = 1
Query:   22 STMLSIASATPSASLSMHEKLK-GKVKLGSTTNSTAGFIKTKSFGRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 786
            S++LSI    PS SL  ++KLK G   L  +   +  F   KS  R+SMVAAVNVSRFEG+ MAPPDPILGVSEAF+ADT + KLNLGVGAYRTEELQPYVL VV KAENLMLERG+NKEYL IEGLAAFNK TAELL GADN  +K+QRVATVQGLSGTGSLRL AALIERYFPGAKVLIS+PTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMI DIKAAP G+F+LLHGCAHNPTGIDPTPEQWEKIADV
Sbjct:    1 SSLLSI----PSLSLQYNDKLKVGGNSLRFSKEQSNTFSNAKSSCRISMVAAVNVSRFEGIPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLMLERGQNKEYLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAKVLISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLHGCAHNPTGIDPTPEQWEKIADV 252          
BLAST of FC873547 vs. ExPASy Swiss-Prot
Match: AATM_DICDI (Aspartate aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=aatA PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.145e-60
Identity = 114/223 (51.12%), Postives = 149/223 (66.82%), Query Frame = 1
Query:  121 TAGFIKTKSFGRVSMVA-AVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 786
            +A  I    FG+ ++   + N + +  V   P DPILGVS A+  DT   K+NLGVGAYR E  +PYVLD VKKA+  + E   + EY PI G+AAFN++ A+L  G +   +KE+R+ATVQ +SGTG+LR+AA    R+  G    + +PTWGNH  IFNDA +P   Y YY+P T GL+FE M  DI AAP GS ILLH CAHNPTG+DPT EQW+KI+++
Sbjct:    4 SARLISNIKFGQKNIRQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYRDENGKPYVLDCVKKADKKIYEANVDHEYAPIVGVAAFNQLAAQLALGEECKHIKEKRIATVQSISGTGALRIAADFFARFLKGKTAYVPNPTWGNHNVIFNDAGIPVKSYGYYNPATCGLNFEAMTKDIAAAPEGSIILLHACAHNPTGVDPTAEQWKKISEI 226          
BLAST of FC873547 vs. ExPASy Swiss-Prot
Match: AATM_BOVIN (Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 4.108e-60
Identity = 116/213 (54.46%), Postives = 145/213 (68.08%), Query Frame = 1
Query:  151 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 786
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V +  PTWGNH  IF DA +    YRYYDPKT G DF G I DI   P  S ILLH CAHNPTG+DP PEQW+++A V
Sbjct:   20 GLAAAASARASSWWAHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIAGLAEFCKASAELALGENNEVLKSGRYVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQSYRYYDPKTCGFDFTGAIEDISKIPAQSVILLHACAHNPTGVDPRPEQWKEMATV 232          
BLAST of FC873547 vs. ExPASy Swiss-Prot
Match: AATC_DAUCA (Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.152e-60
Identity = 115/199 (57.79%), Postives = 145/199 (72.86%), Query Frame = 1
Query:  184 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI 777
            S F  V  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VL+VVKKAE +++ ++   KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++    V I  PTWGNH  IF  A +    YRYY+P+T GLDFEGM+ D+ +AP G+ +LLH CAHNPTG+DPT EQWE+I
Sbjct:    3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVNDQSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLHACAHNPTGVDPTIEQWEQI 201          
BLAST of FC873547 vs. ExPASy Swiss-Prot
Match: AATM_MOUSE (Aspartate aminotransferase, mitochondrial OS=Mus musculus GN=Got2 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.542e-59
Identity = 114/213 (53.52%), Postives = 145/213 (68.08%), Query Frame = 1
Query:  151 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 786
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G +N VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH CAHNPTG+DP PEQW++IA V
Sbjct:   20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENNEVLKSGRFVTVQTISGTGALRVGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFSGALEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASV 232          
BLAST of FC873547 vs. ExPASy Swiss-Prot
Match: AATM_HUMAN (Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 5.932e-59
Identity = 114/213 (53.52%), Postives = 145/213 (68.08%), Query Frame = 1
Query:  151 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 786
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G ++ VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V +  PTWGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH CAHNPTG+DP PEQW++IA V
Sbjct:   20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPTWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATV 232          
BLAST of FC873547 vs. ExPASy Swiss-Prot
Match: AATC_ORYSJ (Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.012e-58
Identity = 108/199 (54.27%), Postives = 143/199 (71.86%), Query Frame = 1
Query:  184 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGEN-KEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI 777
            S F G+  AP DPILGV+ A+  D    K+NLGVGAYRTEE +P VL+VV++AE +++      KEYLPI GLA FNK++A+L+FGAD+  ++E RVATVQ LSGTGSLR+    + R++    + I  PTWGNH  +F  A +    YRYYDP T GLDF+G++ D+ +AP G+ +LLH CAHNPTG+DPT +QWE+I
Sbjct:    5 SVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLHACAHNPTGVDPTLDQWEQI 203          
BLAST of FC873547 vs. ExPASy Swiss-Prot
Match: AAT1_MEDSA (Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.012e-58
Identity = 109/199 (54.77%), Postives = 143/199 (71.86%), Query Frame = 1
Query:  184 SRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLML-ERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKI 777
            S F  +  AP DPILGV+ A+  D    KLNLGVGAYRTEE +P VLDVV++ E  +L +   NKEY+PI GLA FNK++A+L+FGAD+  ++E RV TVQGLSGTGSLR+    + +++    + + +PTWGNH  +FN A +    YRYY P T GLDF+G++ D+ +AP GS +LLH CAHNPTG+DPT EQWE+I
Sbjct:   16 SVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPLVLDVVRRVERQLLNDMSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSGTGSLRVGGEFLAKHYHQRIIYLPTPTWGNHTKVFNLAGLTVKTYRYYAPATRGLDFQGLLEDLGSAPSGSVVLLHACAHNPTGVDPTLEQWEQI 214          
BLAST of FC873547 vs. ExPASy Swiss-Prot
Match: AATM_PONAB (Aspartate aminotransferase, mitochondrial OS=Pongo abelii GN=GOT2 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.726e-58
Identity = 113/213 (53.05%), Postives = 145/213 (68.08%), Query Frame = 1
Query:  151 GRVSMVAAVNVSRFEGVTMAPPDPILGVSEAFKADTDEKKLNLGVGAYRTEELQPYVLDVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGADNSVLKEQRVATVQGLSGTGSLRLAAALIERYFPGAK-VLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIADIKAAPGGSFILLHGCAHNPTGIDPTPEQWEKIADV 786
            G  +  +A   S +  V M PPDPILGV+EAFK DT+ KK+NLGVGAYR +  +PYVL  V+KAE  +  +  +KEYLPI GLA F K +AEL  G ++ VLK  R  TVQ +SGTG+LR+ A+ ++R+F  ++ V +  P+WGNH  IF DA +    YRYYDPKT G DF G + DI   P  S +LLH CAHNPTG+DP PEQW++IA V
Sbjct:   20 GLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKNLDKEYLPIGGLAEFCKASAELALGENSEVLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATV 232          
The following BLAST results are available for this feature:
BLAST of FC873547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
AAT5_ARATH3.783e-11481.32Aspartate aminotransferase, chloroplastic OS=Arabi... [more]
AATM_LUPAN5.113e-11179.69Aspartate aminotransferase P2, mitochondrial (Frag... [more]
AATM_DICDI3.145e-6051.12Aspartate aminotransferase, mitochondrial OS=Dicty... [more]
AATM_BOVIN4.108e-6054.46Aspartate aminotransferase, mitochondrial OS=Bos t... [more]
AATC_DAUCA9.152e-6057.79Aspartate aminotransferase, cytoplasmic OS=Daucus ... [more]
AATM_MOUSE4.542e-5953.52Aspartate aminotransferase, mitochondrial OS=Mus m... [more]
AATM_HUMAN5.932e-5953.52Aspartate aminotransferase, mitochondrial OS=Homo ... [more]
AATC_ORYSJ1.012e-5854.27Aspartate aminotransferase, cytoplasmic OS=Oryza s... [more]
AAT1_MEDSA1.012e-5854.77Aspartate aminotransferase 1 OS=Medicago sativa GN... [more]
AATM_PONAB1.726e-5853.05Aspartate aminotransferase, mitochondrial OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BE11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873547 ID=FC873547; Name=FC873547; organism=Citrus clementina; type=EST; length=786bp
CGTAAAATCACATAGATGGCCTCAACAATGCTTTCAATAGCTTCTGCAAC
TCCTTCAGCTTCGCTATCGATGCACGAGAAGCTCAAGGGCAAGGTTAAGC
TTGGAAGTACCACTAATTCGACAGCAGGATTCATTAAGACTAAATCCTTT
GGTCGAGTATCTATGGTTGCTGCTGTCAATGTTTCTCGTTTTGAGGGTGT
AACGATGGCTCCCCCCGATCCAATTCTTGGAGTTTCTGAAGCTTTTAAAG
CTGACACAGATGAAAAGAAACTCAACCTTGGAGTCGGTGCTTATCGAACC
GAAGAGCTACAGCCTTATGTGCTTGATGTTGTTAAGAAGGCAGAGAATCT
TATGCTGGAAAGGGGGGAAAACAAGGAGTATCTTCCAATTGAAGGTTTGG
CTGCATTCAATAAGGTGACAGCAGAGTTATTGTTTGGAGCTGACAACTCA
GTGCTAAAGGAACAAAGAGTTGCAACAGTTCAAGGTCTTTCAGGAACCGG
TTCTCTTCGGCTGGCTGCAGCTCTTATAGAACGATATTTTCCTGGGGCAA
AAGTACTAATATCATCTCCAACATGGGGTAACCACAAGAACATTTTCAAT
GATGCTAGAGTTCCATGGTCTGAGTACCGCTACTATGATCCAAAAACAGT
GGGTTTGGATTTTGAGGGAATGATAGCAGACATAAAGGCAGCCCCTGGTG
GATCTTTTATTCTGCTTCATGGTTGTGCTCACAACCCAACTGGCATTGAT
CCAACCCCTGAACAATGGGAAAAAATTGCTGATGTC
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