FC873563

Overview
NameFC873563
Unique NameFC873563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC873563 vs. ExPASy Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 2 
Query:  407 KTDCKACMPVKRRQEYGRWIIRSFIKDHNHEIFPDQAYYFRGHRNLDLG-NSNPDALHAIRERTKRMFVTMSRKSGGHKKLDHQKGSVVNHLVSAQ 691
            KTDCKA M VKRR + G+WII  F+KDHNHE+ P  AY+FR  RN+ L   +N D LHA+ ERTK+M+V MSR+SGG+K +    GS++   VS+Q
Sbjct:  122 KTDCKASMHVKRRPD-GKWIIHEFVKDHNHELLPALAYHFRIQRNVKLAEKNNIDILHAVSERTKKMYVEMSRQSGGYKNI----GSLLQTDVSSQ 212
[Close]
BLAST of FC873563 vs. ExPASy Swiss-Prot
Match: FRS4_ARATH (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 2 
Query:  347 SCDRHSHVRQTLCIINLSWS-KTDCKACMPVKRRQEYGRWIIRSFIKDHNHEIFPDQAYYFRGHRNLDLGNSNPDALHAIRERTKRMFVTMSRKSGGHKKLDHQKGSVVN 673
            SC R+   +Q+   IN   S K  CKA M VKRR + G+W + SF+K+HNH++ P+QA+YFR HRN +L  SN   L     R K   +T  +    +  LD   G + N
Sbjct:   44 SCIRYGSKQQSDDAINPRASPKIGCKASMHVKRRPD-GKWYVYSFVKEHNHDLLPEQAHYFRSHRNTELVKSNDSRL----RRKKNTPLTDCKHLSAYHDLDFIDGYMRN 148
The following BLAST results are available for this feature:
BLAST of FC873563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FAR1_ARATH5.190e-2155.21Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis... [more]
FRS4_ARATH1.514e-1240.00Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BG06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873563 ID=FC873563; Name=FC873563; organism=Citrus clementina; type=EST; length=694bp
CTGGCCGAGACTTCTATTGATCACAACGAAAAGGCTGATAAGGCCACAGA
GACACATGAAATTGAGGACGGCCGTGGAGGTTATAACCGCGGTGGCCGTG
GAGGTTATAACGGCGGTGGCCGTGGTGGCTATGGAGGTGGTGGGGGCTAT
GGCGGTGGTGGGGGCTATGGCGGTGGTGGGGGCCATGGCGGTGGCCTCCG
CCGCTACGGGTGCTGGGCACCTGGATATCATGGAGGCTGCAAGCGCTACT
ATTAGGCTGGTGAAGTGGTGCATACTTAGCCTGAACTCGATACTGAAATC
TGAAACAACCTAGTACAGTAGAATCTGCATAACTCATCATTATGGATCGT
GTGACAGGCATTCCCATGTAAGACAGACACTGTGTATAATTAATCTGTCT
TGGTCAAAAACTGATTGCAAGGCTTGCATGCCTGTGAAGAGAAGGCAAGA
ATATGGAAGATGGATTATTCGCAGTTTCATAAAGGATCATAACCATGAAA
TATTCCCAGACCAGGCATATTACTTTCGGGGTCATAGGAATTTAGATCTA
GGTAATAGTAATCCTGATGCCTTGCATGCAATCCGGGAGAGAACAAAAAG
AATGTTCGTCACAATGTCTAGAAAATCTGGCGGGCATAAGAAACTAGATC
ATCAGAAAGGAAGTGTTGTAAATCATTTAGTAAGTGCTCAACAT
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