FC873632

Overview
NameFC873632
Unique NameFC873632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.339e-76
Identity = 124/172 (72.09%), Postives = 140/172 (81.40%), Query Frame = 3
Query:  213 LIDAFVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFTIF 728
            +    +L ++     S+V+C TD SDVQALQVLYTSLNSPS LTNWK   GDPCGESWKG+ CEGSAVV+IDIS LG+SGT+GYLLSDL SLRK D+SGNSIHDT+PYQLPPNLTSLNLA NN SGNLPYSI++M SLSY+NVS NSLT SIGDIF +   LATLDLS   F
Sbjct:    8 MFTVLLLFIASISGFSVVRCVTDPSDVQALQVLYTSLNSPSQLTNWKNGGGDPCGESWKGITCEGSAVVTIDISDLGVSGTLGYLLSDLKSLRKLDVSGNSIHDTLPYQLPPNLTSLNLARNNLSGNLPYSISAMGSLSYMNVSGNSLTMSIGDIFADHKSLATLDLSHNNF 179          

HSP 2 Score: 56.225 bits (134), Expect = 9.339e-76
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 2
Query:  719 HNFSGDLPNSFISLFNISSLYLQNNQLTGSLNVFSGWPLTTL 844
            +NFSGDLP+S  ++  +S LY+QNNQLTGS++V SG PL TL
Sbjct:  177 NNFSGDLPSSLSTVSTLSVLYVQNNQLTGSIDVLSGLPLKTL 218          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.719e-46
Identity = 79/163 (48.47%), Postives = 115/163 (70.55%), Query Frame = 3
Query:  228 VLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 716
            ++I+S+ +T++L+Q  TD+ +V AL V++TSLNSPS L  WK N GDPC +SW+GV C+GS+V  + +SG  L G+ GYLLS+L SL  FDLS N++   IPYQLPPN+ +L+ + N   GN+PYS++ M +L  +N+ +N L   + D+F  L+ L TLD S
Sbjct:    8 LVIVSLAITVTLLQAKTDNQEVSALNVMFTSLNSPSKLKGWKANGGDPCEDSWEGVKCKGSSVTELQLSGFELGGSRGYLLSNLKSLTTFDLSKNNLKGNIPYQLPPNIANLDFSENELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFS 170          

HSP 2 Score: 36.1946 bits (82), Expect = 1.719e-46
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 2
Query:  719 HNFSGDLPNSFISLFNISSLYLQNNQLTGSLNV 817
            +  SG LP SF +L ++  L+LQ+N+ TG +NV
Sbjct:  172 NKLSGKLPQSFANLTSLKKLHLQDNRFTGDINV 204          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.166e-45
Identity = 77/175 (44.00%), Postives = 114/175 (65.14%), Query Frame = 3
Query:  207 SRLIDAFVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFTIFL 731
            +R++ A +++  +    S +   TDSSD  AL ++++S+NSP  L+ W  + GDPCG++WKG+ C GS V  I +  LGLSG++G++L  L S+ +FD+S N++   +PYQLPPNL  LNLA+N F+G+  YSI+ M  L YLN++ N L Q   D F  L  L+ LDLS   F+
Sbjct:    4 NRVVLALLILCIVGFEPSFIHGATDSSDTSALNIMFSSMNSPGQLSQWTASGGDPCGQNWKGITCSGSRVTQIKLPSLGLSGSLGFMLDKLTSVTEFDMSNNNLGGDLPYQLPPNLERLNLANNQFTGSAQYSISMMAPLKYLNLAHNQLKQLAID-FTKLTSLSILDLSSNAFI 177          

HSP 2 Score: 40.817 bits (94), Expect = 3.166e-45
Identity = 18/40 (45.00%), Postives = 27/40 (67.50%), Query Frame = 2
Query:  725 FSGDLPNSFISLFNISSLYLQNNQLTGSLNVFSGWPLTTL 844
            F G LPN+  SL +  S+YLQNNQ +G++++ +  PL  L
Sbjct:  176 FIGSLPNTCSSLTSAKSIYLQNNQFSGTIDILATLPLENL 215          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.021e-44
Identity = 74/159 (46.54%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  255 LSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMG-YLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFTIF 728
            L  +   TD+SD  AL  L++ ++SP+ LT W    GDPCG++W+GV C GS V  I +SGL LSGT+G Y+L  L SL + DLS N++   +PYQ PPNL  LNLA+N F+G   YS++ +  L YLN+  N     I   F  L  L TLD SF  F
Sbjct:   20 LRFIHGATDASDTSALNTLFSGMHSPAQLTQWTAAAGDPCGQNWRGVTCSGSRVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQFPPNLQRLNLANNQFTGAASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLDFSFNSF 178          

HSP 2 Score: 49.6766 bits (117), Expect = 2.021e-44
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 2
Query:  716 FHNFSGDLPNSFISLFNISSLYLQNNQLTGSLNVFSGWPLTTL 844
            F++F+  LP +F SL ++ SLYLQNNQ +G+++V +G PL TL
Sbjct:  175 FNSFTNSLPATFSSLTSLKSLYLQNNQFSGTVDVLAGLPLETL 217          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.017e-40
Identity = 81/169 (47.93%), Postives = 112/169 (66.27%), Query Frame = 3
Query:  210 RLIDAFVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 716
            R++  F+    IF   S+V   TDS DV AL   Y S+NSPS L  W  + GDPCG+SW G+ C+GS+V  I +SG GLSG++GY L +L SL   D+S N+++  +PYQLP  LT L+ + N+F+GN+PYS++ M  LSYLN+ RN+L   + D+F  L  L T+DLS
Sbjct:    7 RIVLVFIACFGIFT--SVVLAKTDSQDVSALNDAYKSMNSPSKLKGWSSSGGDPCGDSWDGITCKGSSVTEIKVSGRGLSGSLGYQLGNLKSLTYLDVSKNNLNGNLPYQLPDKLTYLDGSENDFNGNVPYSVSLMNDLSYLNLGRNNLNGELSDMFQKLPKLETIDLS 173          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.043e-39
Identity = 68/166 (40.96%), Postives = 105/166 (63.25%), Query Frame = 3
Query:  222 AFVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSF 719
            A +L+ +I   L+  +  TD  +V ALQ LY SL +P  L  W+   GDPCGE+W G++C GS++V + +  L L G++G  L  L +L+  D+S N++   IP+ LPPN T +N+A NN + ++P+S+  M SL  LN+S NSL+  +G++F  L  +  +DLSF
Sbjct:   11 ATILLTTILFVLA--KTDTDPLEVLALQDLYKSLRNPEQLRGWRLEGGDPCGEAWLGISCSGSSIVDLQLRELKLLGSLGNQLQHLHNLKILDVSFNNLEGEIPFGLPPNATHINMAYNNLTQSIPFSLPLMTSLQSLNLSHNSLSGPLGNVFSGLQ-IKEMDLSF 173          

HSP 2 Score: 51.9878 bits (123), Expect = 1.043e-39
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 2
Query:  716 FHNFSGDLPNSFISLFNISSLYLQNNQLTGSLNVFSGWPLTTL 844
            F+N +GDLP+SF +L N++SLYLQNN+LTGS+   +  PL  L
Sbjct:  173 FNNLTGDLPSSFGTLMNLTSLYLQNNRLTGSVIYLADLPLADL 215          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.918e-31
Identity = 59/163 (36.20%), Postives = 98/163 (60.12%), Query Frame = 3
Query:  231 LILSIFLTL-SLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 716
            L+LS+ + + S+    T+  DV A+  L+ +L +P VL  W  + GDPCGE+W+G+ C  S ++SI ++   L G +G  L+   S+R  D S N I  +IP  LP  L    L++N F+G++P S+ ++  L+ ++++ N L+  + D+F NL GL  LD+S
Sbjct:   15 LLLSLLIWIPSISLAATNPDDVAAINGLFAALGAP-VLPGWIASGGDPCGEAWQGIICNVSDIISITVNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDIS 176          

HSP 2 Score: 43.1282 bits (100), Expect = 1.918e-31
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 2
Query:  701 NLGPLFHNFSGDLPNSFISLFNISSLYLQNNQLTGSLNVFSGWPLTTL 844
            NL    +N SG LP S  +L  +++L +QNNQL+G+L+V  G PL  L
Sbjct:  172 NLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTLDVLQGLPLQDL 219          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.218e-30
Identity = 64/169 (37.87%), Postives = 98/169 (57.99%), Query Frame = 3
Query:  219 DAFVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFTI 725
            + F  +  + LT+      T+  DV A+  LY +L +PS L +W    GDPCGE W+GV C+ S +  I I G+ + G +   L+D  S++  D S N I  TIP  LP ++ +L+L+SN F+GN+P++++ +  LS L++  N L+  I D F  L+ L  LDLS  I
Sbjct:    7 EVFFGLSVLALTMPFSAGVTNLRDVSAINNLYITLGAPS-LHHWLAFGGDPCGEKWQGVVCDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPSSIRNLSLSSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNI 174          

HSP 2 Score: 34.6538 bits (78), Expect = 1.218e-30
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 2
Query:  731 GDLPNSFISLFNISSLYLQNNQLTGSLNVFSGWPLTTL 844
            G LP+S   L ++  LYLQ+N+LTG+L+V     LT L
Sbjct:  177 GHLPSSMGDLASLKILYLQDNKLTGTLDVIEDLFLTDL 214          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.140e-25
Identity = 66/165 (40.00%), Postives = 99/165 (60.00%), Query Frame = 3
Query:  222 AFVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 716
            +F LI    L+L+L    T+  DV A+  L+ +L SP +L  W  + GDPCGESW+GV C  S V +I +    L G +G  L+   SL+  D S N I  +IP  LP +L +L L+ NNF+G +P S++S+ SLS ++++ N L+  I D+F +L  +  +DLS
Sbjct:   19 SFALISLPSLSLAL----TNPDDVAAINSLFLALESP-LLPGWVASGGDPCGESWQGVLCNASQVETIILISANLGGELGVGLNMFTSLKAMDFSNNHIGGSIPSTLPVSLQNLFLSGNNFTGTIPESLSSLKSLSVMSLNNNLLSGKIPDVFQDLGLMINIDLS 178          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.070e-16
Identity = 59/172 (34.30%), Postives = 93/172 (54.07%), Query Frame = 3
Query:  231 LILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSP--SVLTNWKGN--EGDPCGESWKGVACE--GSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSL---NLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSF 719
            L+ S+F+   +   ++ +SD  AL  L    +     V + WK N  E  PC  +W GV C+  G+ V ++++S  GLSG +G  + +L SL   DLS NS    +P  L  N TSL   +L++N+FSG +P    S+ +L++L + RN+L+  I    G L  L  L +S+
Sbjct:   11 LLCSLFVYFRIDSVSSLNSDGLALLSLLKHFDKVPLEVASTWKENTSETTPCNNNWFGVICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLG-NCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSY 181          

HSP 2 Score: 26.5646 bits (57), Expect = 1.070e-16
Identity = 12/32 (37.50%), Postives = 18/32 (56.25%), Query Frame = 2
Query:  716 FHNFSGDLPNSFISLFNISSLYLQNNQLTGSL 811
            ++N SG +P    +   +  L L NN+L GSL
Sbjct:  181 YNNLSGTIPELLGNCSKLEYLALNNNKLNGSL 212          
The following BLAST results are available for this feature:
BLAST of FC873632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
SRF8_ARATH9.339e-7672.09Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
SRF5_ARATH1.719e-4648.47Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SRF7_ARATH3.166e-4544.00Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
SRF6_ARATH2.021e-4446.54Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SRF4_ARATH4.017e-4047.93Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
SRF2_ARATH1.043e-3940.96Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]
SRF3_ARATH1.918e-3136.20Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
SUB_ARATH1.218e-3037.87Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
SRF1_ARATH2.140e-2540.00Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
PEPR2_ARATH1.070e-1634.30Leucine-rich repeat receptor-like protein kinase P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DE05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1DE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873632 ID=FC873632; Name=FC873632; organism=Citrus clementina; type=EST; length=844bp
CAGCAATGCCTCTCAACAACTTCTACTTGCCCCCTATCCCTAACCTCAGC
TTCTTCTTCTCTTTCGAATCCACGTTACTCTATCATGCACTTCACCACGC
CTAATCCTCACCTCTCTCAACACTGAACTGAACTCCTCAAACTACCAGAA
CCATAACCACAATGGCTGTTCAATACACCGCCGTTTTTCCCCTTCCCTTT
TCCACATCTCGTTTGATCGATGCCTTCGTGTTGATCCTGTCGATCTTCTT
AACTCTGTCTCTTGTTCAATGCACTACTGATTCTTCTGACGTTCAAGCAC
TTCAAGTATTGTACACTTCGCTAAACAGTCCTTCAGTGCTAACTAATTGG
AAAGGCAATGAAGGTGATCCATGTGGAGAGTCGTGGAAAGGGGTAGCTTG
TGAGGGATCAGCTGTCGTTTCCATTGACATTTCTGGGTTAGGACTCAGTG
GAACAATGGGATACCTGCTTTCAGATCTTCTGTCATTGAGAAAATTTGAT
TTGAGTGGCAACAGCATTCATGACACGATCCCATATCAATTACCTCCAAA
TCTTACCAGCCTAAATCTTGCAAGCAACAACTTTAGTGGGAATCTTCCTT
ATTCTATTGCTAGCATGGTCTCACTCTCTTATTTGAATGTTAGCCGTAAT
TCGCTTACCCAGTCAATCGGAGACATTTTTGGTAATCTTGCTGGCCTCGC
AACCTTGGACCTCTCTTTCACAATTTTTCTGGAGATCTTCCGAATTCATT
TATTTCATTGTTCAATATTTCTTCGCTCTATCTGCAGAACAATCAATTGA
CTGGTTCTCTTAATGTCTTTTCCGGCTGGCCTTTGACTACTCTA
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