FC873689

Overview
NameFC873689
Unique NameFC873689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873689 vs. ExPASy Swiss-Prot
Match: GYP7_YARLI (GTPase-activating protein GYP7 OS=Yarrowia lipolytica GN=GYP7 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.925e-16
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 3
Query:    6 IVGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLLNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADY 323
            + GMSDLLSP  V+ +D+  AFW F   + RM  N+ +   +G+  QL  L H+++     +YKHL    + +L F FRMLLV F+REL +++ L +WE++W  DY
Sbjct:  516 VQGMSDLLSPLYVVLQDDTLAFWAFSAFMERMERNY-LRDQSGMRNQLLCLDHLVQFMLPSLYKHLEKTESTNLFFFFRMLLVWFKRELLWDDVLRLWEVLW-TDY 619          
BLAST of FC873689 vs. ExPASy Swiss-Prot
Match: TBC15_MOUSE (TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 3
Query:    6 IVGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLLNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMW 311
            + GMSDLLSP + + E+  DAFWCF   + +M  NF+ E   G+  QL +L  +L L D     +L +  +  L+F FR LL+ F+RE SF + L +WE+MW
Sbjct:  436 VQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFE-EQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMW 536          
BLAST of FC873689 vs. ExPASy Swiss-Prot
Match: TBC15_HUMAN (TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.314e-16
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 3
Query:    6 IVGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLLNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMW 311
            + GMSDLLSP + + E+  DAFWCF   + +M  NF+ E   G+  QL +L  +L L D     +L +  +  L+F FR LL+ F+RE SF + L +WE+MW
Sbjct:  453 VQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFE-EQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMW 553          
BLAST of FC873689 vs. ExPASy Swiss-Prot
Match: GYP7_DEBHA (GTPase-activating protein GYP7 OS=Debaryomyces hansenii GN=GYP7 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 3
Query:    6 IVGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLLNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADY 323
            + GM+DLLSP  V F+D +  FW F   + RM  NF +   +G+  Q+  L  +++    +++KHL    +  L+F FRMLLV F+RE  ++  L +WE++W   Y
Sbjct:  537 VQGMTDLLSPLYVTFQDESLTFWAFVNFMDRMERNF-LRDQSGMKNQMLTLNELVQFMLPDLFKHLEKCESTDLYFFFRMLLVWFKREFEWSSVLSLWEILWTDYY 641          
BLAST of FC873689 vs. ExPASy Swiss-Prot
Match: GYP7_SCHPO (GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe GN=gyp7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 46/131 (35.11%), Postives = 75/131 (57.25%), Query Frame = 3
Query:    6 IVGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLLNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMW----AADYDEALASTLEEKCLEQLVVQLS 386
            + GMSDLL+P  V F DNA  FW    L++R+  NF +   +G+ +QL+ L  ++E  D E++ HL    + +L   FRMLL+ F+RE  +   L +W++++    + DY   +A  + E+  E L+ Q S
Sbjct:  530 VQGMSDLLAPIYVTFNDNALTFWGMVGLMKRLHFNF-LRDQSGMHRQLDTLRLLIEFMDPELFAHLEKTDSSNLFCFFRMLLIYFKREFDWEVLLKLWDVLFTNYLSYDYHIFVAYAIAERHREVLLNQTS 659          
BLAST of FC873689 vs. ExPASy Swiss-Prot
Match: TBC17_MOUSE (TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13
Identity = 38/102 (37.25%), Postives = 61/102 (59.80%), Query Frame = 3
Query:    6 IVGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLLNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMW 311
            + GMSDLLSP + + ++  DAFWCF   +  +  NF+ E    + +QL +L  +L + D+ +   L +  + SL F FR LL+ F+RE  F + L +WE++W
Sbjct:  417 VQGMSDLLSPILFVVQNEVDAFWCFCGFMELVHGNFE-ESQETMKRQLGQLLLLLRVLDQPLCDFLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLW 517          
BLAST of FC873689 vs. ExPASy Swiss-Prot
Match: GYP7_YEAST (GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae GN=GYP7 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 3
Query:    6 IVGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLLNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADY 323
            + GM+DLLSP  V+ ++    FWCF   +  M  NF +   +G+ +Q+  L  +++L   E+ +HL    + +L F FRMLLV F+RE    + + +WE  W   Y
Sbjct:  530 VQGMTDLLSPIYVIMKEEWKTFWCFTHFMDIMERNF-LRDQSGIHEQMLTLVELVQLMLPELSEHLNKCDSGNLFFCFRMLLVWFKREFEMEDIMHIWENFWTFYY 634          
BLAST of FC873689 vs. ExPASy Swiss-Prot
Match: TBC17_HUMAN (TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 3
Query:    6 IVGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLLNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMW 311
            + GMSDLLSP + + ++  DAFWCF   +  ++ NF+ E    + +QL  L  +L + D  +   L +  + SL F FR LL+ F+RE  F + L +WE++W
Sbjct:  417 VQGMSDLLSPILYVIQNEVDAFWCFCGFMELVQGNFE-ESQETMKRQLGRLLLLLRVLDPLLCDFLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLW 517          
BLAST of FC873689 vs. ExPASy Swiss-Prot
Match: GYP7_CANGA (GTPase-activating protein GYP7 OS=Candida glabrata GN=GYP7 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 3
Query:    6 IVGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLLNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADY 323
            + GM+DLLSP   +  D    FWCF   + RM  NF +   +G+  Q+  L  + +L    +  HL    +  L F FRMLLV F+RE ++++   +WE+ +   Y
Sbjct:  520 VQGMTDLLSPLYYIIRDEETTFWCFTNFMERMERNF-LRDQSGIRDQMLALTDLCQLMLPRLSAHLQKCDSSDLFFCFRMLLVWFKREFNYDDIFNIWEVFFTDFY 624          
BLAST of FC873689 vs. ExPASy Swiss-Prot
Match: TBC16_HUMAN (TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 3
Query:   12 GMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGP--TGVMKQLEELWHILELTDREMYKHLLNIGAESLH--FAFRMLLVLFRRELSFNEALCMWEMMWA 314
            GMSDL++P +    D +D FWCF  L   M+N   +  P    + KQL  L  +L LT    Y+HL+++G + L   F  R LL+ F+RE    EAL +WE  WA
Sbjct:  532 GMSDLVAPILAEVLDESDTFWCFVGL---MQNTIFVSSPRDEDMEKQLLYLRELLRLTHVRFYQHLVSLGEDGLQMLFCHRWLLLCFKREFPEAEALRIWEACWA 633          
The following BLAST results are available for this feature:
BLAST of FC873689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GYP7_YARLI1.925e-1641.51GTPase-activating protein GYP7 OS=Yarrowia lipolyt... [more]
TBC15_MOUSE7.314e-1642.16TBC1 domain family member 15 OS=Mus musculus GN=Tb... [more]
TBC15_HUMAN7.314e-1642.16TBC1 domain family member 15 OS=Homo sapiens GN=TB... [more]
GYP7_DEBHA6.192e-1536.79GTPase-activating protein GYP7 OS=Debaryomyces han... [more]
GYP7_SCHPO1.379e-1435.11GTPase-activating protein gyp7 OS=Schizosaccharomy... [more]
TBC17_MOUSE2.601e-1337.25TBC1 domain family member 17 OS=Mus musculus GN=Tb... [more]
GYP7_YEAST5.795e-1334.91GTPase-activating protein GYP7 OS=Saccharomyces ce... [more]
TBC17_HUMAN9.885e-1337.25TBC1 domain family member 17 OS=Homo sapiens GN=TB... [more]
GYP7_CANGA9.885e-1333.96GTPase-activating protein GYP7 OS=Candida glabrata... [more]
TBC16_HUMAN1.093e-1140.00TBC1 domain family member 16 OS=Homo sapiens GN=TB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DH05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1DH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873689 ID=FC873689; Name=FC873689; organism=Citrus clementina; type=EST; length=741bp
GGCTGATTGTAGGTATGAGCGATTTGCTATCTCCTTTTGTTGTTCTATTT
GAAGACAATGCTGATGCATTTTGGTGCTTTGAGATGCTCTTAAGGAGAAT
GCGCAACAATTTCCAGATGGAAGGACCAACGGGAGTTATGAAGCAGTTGG
AAGAATTGTGGCATATTTTGGAACTCACAGATAGGGAAATGTATAAACAT
CTGTTGAATATAGGTGCTGAAAGCCTACATTTTGCATTTCGGATGCTGCT
GGTACTGTTTCGCCGGGAGTTATCTTTCAATGAAGCTCTTTGTATGTGGG
AGATGATGTGGGCTGCTGATTATGATGAAGCTTTGGCAAGCACTTTAGAG
GAGAAGTGTCTGGAACAGTTGGTTGTACAGCTTTCAAGGGAGTCTGGAGT
AGTAATAAGAGAAGGAAGCACAGAAAACAGTGGTGGTGATTTAAAGGGTG
GCTTACAACCAAAAAATGGAAACATAGAGTGTTCTGTCTCTGCCGATGAT
GGAATAAAATCAGCATCAGCTCATCCCTTTTGTGGCTTGACCAGGACTTT
TTGGTCAAGAAATGGTCACTCACAGAATTTTACTGTAGTCTCATCAACCT
GGAATGTGAATGAAGAATTACCTGTCTTTTGTGTGGCAGCTATTCTTATA
ATGAACCGTCATAAAGTTATGAAAGAAACCCGTTCAATTGATGATATGAT
AAAGGCAGGTGTATTACTGAAAAAAAAAAAAAAAAAAAAAA
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