FC873696

Overview
NameFC873696
Unique NameFC873696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873696 vs. ExPASy Swiss-Prot
Match: C3H65_ARATH (Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis thaliana GN=EMB1789 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.919e-43
Identity = 98/212 (46.23%), Postives = 122/212 (57.55%), Query Frame = 2
Query:  188 AEKNRQLGVRRLKL-PQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHK-LPPKEQDPPTPSTCTPELKPSPPLYASNLLK-----------PLNNNKV----------SHQNVDALSNHGKVSSFKNIEQSVAKSI--LKPPALAPKGISYLFLGKSS 748
            A++   LGV++LKL P   KPK +KYC HYLKGRC EGDKCKFSHDT+P TK +  CC+FA  SCMKGD+CPFDHDLSKYPC NF+ KGFC RGD+CLFSHK  P    D P+ +      K +   ++    K           P    +V          SH N     N    SS K  E      +  L+ P++APKG+S+L L K+S
Sbjct:  330 AQERIALGVKKLKLKPVAPKPKPIKYCRHYLKGRCHEGDKCKFSHDTIPETKCSP-CCYFATQSCMKGDDCPFDHDLSKYPCNNFITKGFCYRGDSCLFSHKGTPQSASDTPSANVTVSSTKITAASFSPQKTKKQSVRDAIAKLPAIQARVSSSVAFLKPSSHSN---QRNSSDASSSKINEHVTPPQVPPLRKPSVAPKGMSFLSLDKTS 537          
BLAST of FC873696 vs. ExPASy Swiss-Prot
Match: C3H7_ORYSJ (Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp. japonica GN=Os01g0572100 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.179e-37
Identity = 83/187 (44.39%), Postives = 109/187 (58.29%), Query Frame = 2
Query:  209 GVRRLKLPQNLKPKTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPSTCTPELKPSPPLYASNLLKPLN-NNKVSHQNVDALSNHGKVSSFKNIEQSVAKSIL-------KPPALAPKGISYLFLGKS 745
            GV+RLKL   +KPK VK CH YL G+CQ+G+ CKFSHDT PLTKS K C H+AR SC+KGD+CP+DH+LSKYPC NF+  G C RGD C FSH +P  E         TP+ K S    AS++ +  N   + S Q    + +    +S      S+ K++        K P   P+GI +L   K+
Sbjct:  417 GVKRLKLQPVIKPKVVKVCHFYLHGKCQQGNLCKFSHDTTPLTKS-KPCTHYARGSCLKGDDCPYDHELSKYPCHNFMENGMCIRGDKCKFSHVIPTAE------GPSTPDAKKS---NASSVPEKANCQEQTSRQKTSTVYSGEPATSVPIKHHSILKNLAGISGNAQKVPVRIPRGIQFLPFNKA 593          
BLAST of FC873696 vs. ExPASy Swiss-Prot
Match: ZC3H6_MOUSE (Zinc finger CCCH domain-containing protein 6 OS=Mus musculus GN=Zc3h6 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  248 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKE 505
            K  + C ++L+GRC +GD CKF+HD   L K  + C ++ +  C KG+NC + H  S++PC+ + +   C +GD C FSH    KE
Sbjct:  271 KGKQICKYFLEGRCIKGDHCKFNHD-AELEKKKEVCKYYLQGYCTKGENCIYMH--SEFPCKFYHSGAKCYQGDKCKFSHDDLTKE 353          
BLAST of FC873696 vs. ExPASy Swiss-Prot
Match: ZC3H6_HUMAN (Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens GN=ZC3H6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.857e-12
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  248 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKE 505
            K  + C ++L+GRC +GD+CKF HD   L K  + C  + +  C KG+NC + H  +++PC+ + +   C +GDNC FSH    KE
Sbjct:  273 KGKQICKYFLEGRCIKGDQCKFDHD-AELEKRKEICKFYLQGYCTKGENCIYMH--NEFPCKFYHSGAKCYQGDNCKFSHDDLTKE 355          
BLAST of FC873696 vs. ExPASy Swiss-Prot
Match: ZC3H4_MOUSE (Zinc finger CCCH domain-containing protein 4 OS=Mus musculus GN=Zc3h4 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 2
Query:  263 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPST 529
            C ++++GRC  GD C FSHD + L K  + C  +    C + +NCP+ H    +PC+ +   G C  GD+C+FSH       DP T  T
Sbjct:  395 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYHTTGNCINGDDCMFSH-------DPLTEET 473          
BLAST of FC873696 vs. ExPASy Swiss-Prot
Match: ZC3H4_HUMAN (Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens GN=ZC3H4 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 2
Query:  263 CHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSHKLPPKEQDPPTPST 529
            C ++++GRC  GD C FSHD + L K  + C  +    C + +NCP+ H    +PC+ +   G C  GD+C+FSH       DP T  T
Sbjct:  396 CKYFVEGRCTWGDHCNFSHD-IELPKKRELCKFYITGFCARAENCPYMH--GDFPCKLYHTTGNCINGDDCMFSH-------DPLTEET 474          
BLAST of FC873696 vs. ExPASy Swiss-Prot
Match: ZC3H8_MOUSE (Zinc finger CCCH domain-containing protein 8 OS=Mus musculus GN=Zc3h8 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  248 KTVKYCHHYLKGRCQEGDKCKFSHDTVPLTKSTKACCHFARNSCMKGDNCPFDHDLSKYPCENFVAKGFCNRGDNCLFSH 487
            K  + C ++L+ +C +GD+CKF HD   + K  + C ++ +  C KG+NC + H  S+YPC+ +     C +GD+C FSH
Sbjct:  206 KGKQVCKYFLERKCIKGDQCKFDHD-AEIEKKKEMCKYYVQGYCTKGENCLYLH--SEYPCKFYHTGTKCYQGDHCNFSH 282          
The following BLAST results are available for this feature:
BLAST of FC873696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
C3H65_ARATH5.919e-4346.23Zinc finger CCCH domain-containing protein 65 OS=A... [more]
C3H7_ORYSJ2.179e-3744.39Zinc finger CCCH domain-containing protein 7 OS=Or... [more]
ZC3H6_MOUSE1.422e-1239.53Zinc finger CCCH domain-containing protein 6 OS=Mu... [more]
ZC3H6_HUMAN1.857e-1239.53Zinc finger CCCH domain-containing protein 6 OS=Ho... [more]
ZC3H4_MOUSE9.217e-1237.08Zinc finger CCCH domain-containing protein 4 OS=Mu... [more]
ZC3H4_HUMAN9.217e-1237.08Zinc finger CCCH domain-containing protein 4 OS=Ho... [more]
ZC3H8_MOUSE4.574e-1137.50Zinc finger CCCH domain-containing protein 8 OS=Mu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3CE04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873696 ID=FC873696; Name=FC873696; organism=Citrus clementina; type=EST; length=786bp
ATCAGCAGTTTTTCAGCATCTCTTGATGATTCAACAGTGCAGAAAGAAGT
TGTAAAGCAAAGGGTGACTCAAGAGCAAGGAATTACGACCAAAGACAAGT
TGGATTCTGGTGCTTGCAATAAGAGAAAGCGGAGTGCTCTGTCTAAGAAA
AAGAAAGCAAAGAAAAAGCAAAAAGAACGCAAAACGTGCAGAAAAGAACC
GACAGCTTGGCGTTCGAAGGTTGAAATTGCCCCAAAATTTGAAACCAAAA
ACTGTTAAATATTGCCACCATTATCTCAAGGGAAGATGTCAAGAGGGTGA
CAAGTGTAAATTTTCACATGATACCGTACCTTTGACAAAGTCCACGAAGG
CATGCTGTCATTTTGCACGAAATTCATGCATGAAAGGAGATAACTGTCCA
TTTGATCATGACCTCTCTAAATATCCCTGTGAGAATTTTGTGGCCAAAGG
CTTTTGCAACAGAGGTGATAATTGTTTGTTTTCACACAAGCTACCACCCA
AGGAACAGGACCCGCCTACTCCAAGTACTTGCACACCTGAACTGAAACCT
TCACCTCCGTTGTATGCTTCAAATTTGTTGAAGCCACTAAACAATAACAA
AGTCTCCCATCAGAATGTTGATGCACTATCCAACCATGGGAAAGTTTCTT
CTTTCAAAAATATAGAACAAAGTGTGGCAAAGAGTATACTGAAGCCACCT
GCACTTGCACCTAAAGGTATTAGTTATCTCTTTCTGGGGAAGTCATCATT
TCTTGAAGCCAGCAATCTTGGCCAAGGCATCTCATC
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