FC875320

Overview
NameFC875320
Unique NameFC875320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875320_ssr81 microsatellite FC875320_ssr81:81..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10204 contig Ccv1_Contig10204:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875320 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 71/138 (51.45%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIXTRTAAPAANVNFG 677
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G
Sbjct:   67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRG 195          
BLAST of FC875320 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31
Identity = 71/138 (51.45%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIXTRTAAPAANVNFG 677
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRG 198          
BLAST of FC875320 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 9.117e-31
Identity = 70/138 (50.72%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIXTRTAAPAANVNFG 677
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA ++N G
Sbjct:   69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSINRG 197          
BLAST of FC875320 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 70/138 (50.72%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIXTRTAAPAANVNFG 677
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   PA +VN G
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRG 198          
BLAST of FC875320 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.910e-30
Identity = 76/180 (42.22%), Postives = 102/180 (56.67%), Query Frame = 3
Query:  138 MSSALDMSLDNIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIXTRTAAPAANVNFG 677
            M+  +DMSLD+IIK N+                         G NR APY+  K     WQHD+F            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y  V LDG+PM I++V + I  +   PA + N G
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQ-RRPAQSGNRG 167          
BLAST of FC875320 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 635
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 188          
BLAST of FC875320 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 635
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I
Sbjct:   70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185          
BLAST of FC875320 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.435e-28
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 3
Query:  264 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 635
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I
Sbjct:   69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI 184          
The following BLAST results are available for this feature:
BLAST of FC875320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
THOC4_TAEGU5.345e-3151.45THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_BOVIN6.981e-3151.45THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_MOUSE9.117e-3150.72THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
THOC4_HUMAN2.653e-3050.72THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
REFP2_MOUSE5.910e-3042.22RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_XENTR5.003e-2952.42THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THO4A_XENLA1.456e-2851.61THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA9.435e-2850.81THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
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Properties
Property NameValue
Genbank descriptionC31402F06EF CTVClemen1 Citrus clementina cDNA clone C31402F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875320 ID=FC875320; Name=FC875320; organism=Citrus clementina; type=EST; length=684bp
GATCTCAAAACTTTCCTTTGTTCGAGGAAACCCTAAATTTCCTCCTCAGC
CTTCCTCTCTTTCTACTTTTCCTCTTAATTTCTCTCTCTCTTATTACGAT
TTTATCTTTGATTTTCTATTTTCTGTTATAGTAAAAAATGTCAAGCGCTT
TAGATATGTCTCTTGACAATATCATCAAGAACAACAAAAAGTCTGGATCT
GGCAACTTCCGGGGCCGGGGTCGAGGATCCGGACCCGGCCCTGCTCGTCG
CATCCCCAATCGTGGTGCAAACCGTGTGGCGCCGTATACCACCGCCAAAG
CGCCGGAGACGACGTGGCAGCACGATATGTTTGCAGATCAGGTGAGTGCT
TTCCCGGTACAGCAGGCGGGGCGGGCTTCAGCTATAGAGACTGGAACGAA
GCTGTACATATCAAATCTGGATTACGGTGTCTCTAATGAAGACATCAAGG
AACTGTTTTCTGAAGTTGGTGACTTGAAGCGGTACTCAATCCATTATGAT
AGAAGTGGGAGATCAAAGGGAACGGCAGAGGTTGTCTATTCACGACGAGC
AGATGCTGTGGCTGCAGTCAAGAGATACAACAATGTGCAGCTTGATGGGA
AGCCGATGAAAATTGAGATTGTGGGAACAAACATTGNCACCCGTACTGCA
GCTCCAGCTGCTAATGTCAACTTTGGAAATTCAA
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