FC875349

Overview
NameFC875349
Unique NameFC875349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875349_ssr49 microsatellite FC875349_ssr49:49..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875349_ssr77 microsatellite FC875349_ssr77:77..86. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875349_ssr214 microsatellite FC875349_ssr214:214..223. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9941 contig Ccv1_Contig9941:109..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2E_ARATH (Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.725e-49
Identity = 105/178 (58.99%), Postives = 121/178 (67.98%), Query Frame = 1
Query:  208 MYRERGTGG-------SKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSVLLGKHPADHQRDSRSASLSKNHAXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            MY++R  GG       S+SE++ G +DRKRINDALDK L++SSPSTSR     KD   +     A  Q  SRS  +  +                        WISWFCNLRGNEFFCEVD+DYIQDDFNLCGLSGQVPYYDYALDLILDVESS+G+MFTEEQ+E+VESAAEMLYGLI
Sbjct:    1 MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRV-FTSKDKDSVPSTSTAKSQLHSRSPDVESD-------TDSEGSDVSGSEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQHEMVESAAEMLYGLI 170          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_ARATH (Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.725e-49
Identity = 114/184 (61.96%), Postives = 125/184 (67.93%), Query Frame = 1
Query:  208 MYRERGTGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGKDMSV---------LLGKHPADH--QRDSRSASLSKNH--AXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            MYR+RGT  S+ EVV    DRKRINDAL    ER SPSTSR  +NGK             L+GK  +++   RDSRSASLSKN+  +                      WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLS  VPYY+YALDLILDVESS GEMFTEEQNEL+ESAAEMLYGLI
Sbjct:    1 MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQ-VNGKGKGTVTAATTTANLIGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEMLYGLI 175          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2C_ARATH (Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.560e-49
Identity = 111/178 (62.36%), Postives = 120/178 (67.42%), Query Frame = 1
Query:  208 MYRERGTGGSKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTINGK----DMSVLLGKHPADHQRDSRSASLSKNH---AXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            MYRERG  GSKSEVV    DRKRIN+  D    R S S S+  +NGK      SVL+GK     +  SRS S+SK +   A                      WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLS QVPYYDYALDLILDVESSHGEMFTEEQNEL+ESAAEMLYG+I
Sbjct:    1 MYRERGMVGSKSEVV----DRKRINEIHDN---RPSHSMSQP-VNGKGKVTSTSVLMGKQQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGMI 170          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2D_ARATH (Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.366e-45
Identity = 98/182 (53.85%), Postives = 123/182 (67.58%), Query Frame = 1
Query:  208 MYRERGTGG----SKSEVVVGPVDRKRINDALDKQLERSSPSTSRTTI-NGKDM------SVLLGKHPADHQRDSRSASLSKNHAXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            MY+ER  GG    S+SE++ G +DRKRINDAL+K+LE+SS ST+ + + + KD       S        + + DS  + +S +                        WISWFCNLRGN+FFCEVD+DYIQDDFNLCGLSGQVPYYDYALDLILDV++S+ EMFT+EQ+E+VESAAEMLYGLI
Sbjct:    1 MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFTSTKTQLPDVESETDSEGSDVSGSEGDDTS------------------WISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLI 164          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_XENLA (Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLI
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_RAT (Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLI
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_RABIT (Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLI
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_PIG (Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLI
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_MOUSE (Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLI
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83          
BLAST of FC875349 vs. ExPASy Swiss-Prot
Match: CSK2B_HUMAN (Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  496 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVESSHGEMFTEEQNELVESAAEMLYGLI 720
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E          Q++L+E AAEMLYGLI
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLI 83          
The following BLAST results are available for this feature:
BLAST of FC875349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CSK2E_ARATH1.725e-4958.99Putative casein kinase II subunit beta-4 OS=Arabid... [more]
CSK2B_ARATH1.725e-4961.96Casein kinase II subunit beta OS=Arabidopsis thali... [more]
CSK2C_ARATH8.560e-4962.36Casein kinase II subunit beta' OS=Arabidopsis thal... [more]
CSK2D_ARATH3.366e-4553.85Casein kinase II subunit beta-3 OS=Arabidopsis tha... [more]
CSK2B_XENLA4.730e-2366.67Casein kinase II subunit beta OS=Xenopus laevis GN... [more]
CSK2B_RAT4.730e-2366.67Casein kinase II subunit beta OS=Rattus norvegicus... [more]
CSK2B_RABIT4.730e-2366.67Casein kinase II subunit beta OS=Oryctolagus cunic... [more]
CSK2B_PIG4.730e-2366.67Casein kinase II subunit beta OS=Sus scrofa GN=CSN... [more]
CSK2B_MOUSE4.730e-2366.67Casein kinase II subunit beta OS=Mus musculus GN=C... [more]
CSK2B_HUMAN4.730e-2366.67Casein kinase II subunit beta OS=Homo sapiens GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC31402H11EF CTVClemen1 Citrus clementina cDNA clone C31402H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875349 ID=FC875349; Name=FC875349; organism=Citrus clementina; type=EST; length=739bp
CAATAATAATCTCTAGCAAGAGACAGCATGGGCTGAGCCGCTAAGCCTTA
TATATATATATATATATAAAAAAAAAACACACACACAAACTGCTTCCCAT
CAAAAACCCTAGGCAGGGTTAGTGTGGTAATTTCTCGCGCCATGTGTCGG
TGGTAATCGTGTAGCCTTTAATTAAAAAAAATCGTCATCGGCGAAGGAGG
ATACAAGATGTATAGAGAGAGAGGGACCGGTGGGTCCAAGTCGGAAGTGG
TTGTCGGACCAGTTGATCGGAAGCGGATTAACGATGCATTAGATAAGCAG
CTGGAGAGATCTTCGCCCTCCACTTCGAGAACGACGATCAACGGCAAGGA
TATGTCCGTTCTCTTGGGGAAGCATCCGGCTGATCATCAGCGAGACTCTC
GCTCCGCTTCTCTCTCCAAAAATCATGCTTCTGATGAATCTGAAACAGAC
AGTGAAGAGTCAGATGTCAGTGGTTCTGAGGGAGATGACACATCTTGGAT
CTCATGGTTTTGCAATCTTCGAGGAAATGAATTCTTCTGTGAAGTGGATG
ATGACTATATACAAGATGATTTTAACCTCTGTGGGCTAAGCGGTCAAGTT
CCATATTATGATTATGCACTTGACTTGATTTTGGATGTTGAGTCCTCTCA
TGGTGAAATGTTCACTGAAGAACAAAATGAATTAGTTGAATCTGCAGCAG
AGATGCTTTATGGTCTAATCATGCTCGATACATACTGAC
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