FC875362

Overview
NameFC875362
Unique NameFC875362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6740 contig Ccv1_Contig6740:366..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875362 vs. ExPASy Swiss-Prot
Match: CHUP1_ARATH (Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 4.601e-105
Identity = 195/239 (81.59%), Postives = 213/239 (89.12%), Query Frame = 2 
Query:    2 LMKREAKKDXXXXXXXXXXXXD--ARSNMIGEIENKSSFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKGPNREFLLLQGVRFAFRVHQFAGGFDA 712
            LMKRE+KK+               AR+NMIGEIEN+S+FLLAVKADVETQGDFVQSLA EVRA+SFT +EDL+ FV+WLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDL+KLEKQV+SFVDDP L CE ALKKMYKLLEKVEQSVYALLRTRDMAISRY+EFGIPVDWL DTGVVGKIKLSSVQLA+KYMKRV+ EL+++S  +K PNREFLLLQGVRFAFRVHQFAGGFDA
Sbjct:  731 LMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADVETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDA 969
The following BLAST results are available for this feature:
BLAST of FC875362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CHUP1_ARATH4.601e-10581.59Protein CHUP1, chloroplastic OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC31403B03EF CTVClemen1 Citrus clementina cDNA clone C31403B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875362 ID=FC875362; Name=FC875362; organism=Citrus clementina; type=EST; length=713bp
ATTGATGAAACGTGAGGCAAAGAAGGATACATCATCCTTGATTTCATCCA
CTTCTAATACATCAGATGCTAGGAGCAACATGATTGGGGAGATTGAGAAC
AAATCATCATTCCTTTTAGCTGTGAAAGCCGATGTGGAAACTCAAGGTGA
TTTTGTCCAGTCATTGGCAGCTGAAGTTAGAGCAGCTTCCTTCACAACTG
TAGAAGATTTAGTGGTCTTTGTGAACTGGCTGGACGAGGAACTCTCCTTC
TTGGTTGACGAGCGGGCTGTTCTCAAGCACTTTGATTGGCCTGAAGGGAA
AGCAGATGCATTAAGAGAGGCTGCTTTTGAGTACCAGGACCTAGTGAAAT
TGGAAAAGCAAGTGTCCTCTTTTGTTGATGATCCTGGCCTCCCATGTGAA
TCTGCACTAAAGAAGATGTACAAATTGCTTGAAAAAGTGGAACAGAGTGT
TTATGCATTGTTGCGTACAAGAGACATGGCTATTTCACGATATAGAGAAT
TTGGAATTCCAGTTGATTGGTTGCTAGACACTGGAGTTGTTGGCAAGATC
AAACTCTCTTCCGTGCAATTGGCAAGGAAGTACATGAAACGTGTTTCAAC
TGAACTTGAAGCTATGAGCAGACCGGAGAAAGGACCAAACAGAGAGTTTT
TACTTCTGCAAGGTGTCCGTTTTGCTTTTCGTGTTCACCAGTTTGCTGGA
GGCTTTGATGCGG
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