FC875374
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA2_HUMAN (Transcription elongation factor A protein 2 OS=Homo sapiens GN=TCEA2 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.043e-30 Identity = 74/199 (37.19%), Postives = 115/199 (57.79%), Query Frame = 2 Query: 5 PSVRKPSQGTI-ATPKLTQL----IKCNDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586 PS ++P +TP++T + C D+ R+K RE+L AL + D + + C+ R++ +E +F +G + K + RS + N++D KNPDLR+ VL G + P+++ M+ EEMASDE + + + ++A+ E Q TD F C +C ++ CTY Q+QTRS+DEPMTT+V C C RWKFC Sbjct: 109 PSRKRPELPRAPSTPRITTFPPVPVTC-DAVRNKCREMLTAAL-----QTDHDHVAIGADCE--RLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA1_RAT (Transcription elongation factor A protein 1 OS=Rattus norvegicus GN=Tcea1 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30 Identity = 72/176 (40.91%), Postives = 101/176 (57.39%), Query Frame = 2 Query: 71 NDSSRDKIRELLANALSK----VASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586 +DS R K RE+LA AL VA ADEE + +E +++++ + K + RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC Sbjct: 137 SDSVRLKCREMLAAALRTGDDYVAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA1_MOUSE (Transcription elongation factor A protein 1 OS=Mus musculus GN=Tcea1 PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30 Identity = 72/176 (40.91%), Postives = 101/176 (57.39%), Query Frame = 2 Query: 71 NDSSRDKIRELLANALSK----VASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586 +DS R K RE+LA AL VA ADEE + +E +++++ + K + RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC Sbjct: 137 SDSVRLKCREMLAAALRTGDDYVAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA1_HUMAN (Transcription elongation factor A protein 1 OS=Homo sapiens GN=TCEA1 PE=1 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30 Identity = 71/176 (40.34%), Postives = 101/176 (57.39%), Query Frame = 2 Query: 71 NDSSRDKIRELLANALSK----VASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586 +DS R K RE+LA AL +A ADEE + +E +++++ + K + RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC Sbjct: 137 SDSVRLKCREMLAAALRTGDDYIAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA1_BOVIN (Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30 Identity = 71/176 (40.34%), Postives = 101/176 (57.39%), Query Frame = 2 Query: 71 NDSSRDKIRELLANALSK----VASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586 +DS R K RE+LA AL +A ADEE + +E +++++ + K + RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC Sbjct: 137 SDSVRLKCREMLAAALRTGDDYIAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA3_MOUSE (Transcription elongation factor A protein 3 OS=Mus musculus GN=Tcea3 PE=1 SV=3) HSP 1 Score: 130.954 bits (328), Expect = 6.762e-30 Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = 2 Query: 20 PSQGTIATPKLTQLIKC---NDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586 PS T A P + L C DS RDK E+L+ AL +A++ D CD ++A +E ++++L + + + RS + N++D +NP LR+ VL G + PE + M+ EEMASDE + + ++A+ E Q TTD +C++C ++ CTY Q+QTRSADEPMTT+V C C RWKFC Sbjct: 164 PSTPTFA-PAVCLLAPCYLTGDSVRDKCVEMLSAAL-----KAEDNFKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 347
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA2_RAT (Transcription elongation factor A protein 2 OS=Rattus norvegicus GN=Tcea2 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 8.832e-30 Identity = 75/198 (37.88%), Postives = 114/198 (57.58%), Query Frame = 2 Query: 8 SVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586 S +KP T +TP++T I C D+ R+K RE+L AL + D + + +C+ ++ +E +F +G + K + RS + N++D KNP LR+ VL G + P+++ M+ EEMASDE + + + ++A+ E Q TD F C +C ++ CTY Q+QTRS+DEPMTTYV C C RWKFC Sbjct: 110 SCKKPDPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVAVGVSCE--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA3_BOVIN (Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29 Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = 2 Query: 20 PSQGTIATPKLTQLIKC---NDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586 PS T A P + L C DS RDK E+L+ AL +AD++ D CD ++A +E ++++L + + + RS + N++D +NP LR+ VL G + + M+ EEMASDE + + ++A+ E Q TTD F+C++C ++ CTY Q+QTRSADEPMTT+V C C RWKFC Sbjct: 166 PSSPTFA-PSVCLLAPCYLTGDSVRDKCVEMLSAAL-----KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 349
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA2_BOVIN (Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29 Identity = 74/199 (37.19%), Postives = 113/199 (56.78%), Query Frame = 2 Query: 5 PSVRKPSQGTI-ATPKLTQL----IKCNDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586 PS ++P + +TP++T + C D+ R K RE+L AL ++ D I C +A +E +F +G + K + RS + N++D KNP LR++VL G + P+++ M+ EEMASDE + + + ++A+ E Q TD F C +C ++ CTY Q+QTRS+DEPMTT+V C C RWKFC Sbjct: 110 PSRKRPELPRMPSTPRITTFPPVPVTC-DAVRTKCREMLTAALQ---TDHDHVAIGADCEC----LAGQIEECIFRDVGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 300
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA2_MOUSE (Transcription elongation factor A protein 2 OS=Mus musculus GN=Tcea2 PE=2 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 2.570e-29 Identity = 75/198 (37.88%), Postives = 113/198 (57.07%), Query Frame = 2 Query: 8 SVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586 S +KP T +TP++T I C D+ R+K RE+L AL + D + + C+ ++ +E +F +G + K + RS + N++D KNP LR+ VL G + P+++ M+ EEMASDE + + + ++A+ E Q TD F C +C ++ CTY Q+QTRS+DEPMTTYV C C RWKFC Sbjct: 110 SCKKPDPPRTPSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVAVGVNCE--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299 The following BLAST results are available for this feature:
BLAST of FC875374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875374 ID=FC875374; Name=FC875374; organism=Citrus clementina; type=EST; length=738bpback to top |