FC875393

Overview
NameFC875393
Unique NameFC875393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig69 contig Ccv1_Contig69:144..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_ARATH (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1)

HSP 1 Score: 439.113 bits (1128), Expect = 1.125e-122
Identity = 211/233 (90.56%), Postives = 225/233 (96.57%), Query Frame = 3
Query:   24 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 722
            S D SFPPGG+ SLRLPVVVTSQETNLVA CRR+YAHAHDYHINSISN+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAYSSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSRDYMTLKLWDINMDSGPVA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFG
Sbjct:  183 SKDFSFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 415          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_ORYSJ (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1)

HSP 1 Score: 436.032 bits (1120), Expect = 9.528e-122
Identity = 210/240 (87.50%), Postives = 224/240 (93.33%), Query Frame = 3
Query:    3 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 722
            E+ +   +ND  FPPGG +SLRLPVVVT Q+ NLV  CRR+Y+HAHDYHINSISNNSDGET+ISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQSALCD H+KLFEE EAPG+RSFFTEIIAS+SDIKFAR+GRHILSRDYMTLKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFG
Sbjct:  200 EKLYNFPNNDLLFPPGGCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 439          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_ORYSI (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2)

HSP 1 Score: 436.032 bits (1120), Expect = 9.528e-122
Identity = 210/240 (87.50%), Postives = 224/240 (93.33%), Query Frame = 3
Query:    3 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 722
            E+ +   +ND  FPPGG +SLRLPVVVT Q+ NLV  CRR+Y+HAHDYHINSISNNSDGET+ISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQSALCD H+KLFEE EAPG+RSFFTEIIAS+SDIKFAR+GRHILSRDYMTLKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFG
Sbjct:  200 EKLYNFPNNDLLFPPGGCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFG 439          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_ORYSJ (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2)

HSP 1 Score: 424.476 bits (1090), Expect = 2.869e-118
Identity = 206/244 (84.43%), Postives = 221/244 (90.57%), Query Frame = 3
Query:    9 NFGCA------SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 722
            N GC+      ++D  FPPGG  SLRLPVVV SQ+ NLVA CRR+YAHAHDYHINSIS NSDGET+ISADDLRINLWNLEI+NQSFNIVDVKP NMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQSALCD HSK+FEE EAPG+RSFFTEIIASISDIKF+R+GR+ILSRDYMTLKLWD+NMDSGPV+TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG  VATGSY NLFRVFG
Sbjct:  193 NGGCSDKSSFLNSDILFPPGGYPSLRLPVVVASQDVNLVARCRRVYAHAHDYHINSISTNSDGETYISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDNHSKIFEEHEAPGSRSFFTEIIASISDIKFSRDGRYILSRDYMTLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGNLFRVFG 436          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABA_ARATH (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2)

HSP 1 Score: 419.853 bits (1078), Expect = 7.066e-117
Identity = 202/233 (86.70%), Postives = 219/233 (93.99%), Query Frame = 3
Query:   27 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGV 725
            ND S P GG+SSLRLPVVVTS E++ VA CRR+YAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA MEDL+EVITSAEFHPTHCNMLAYSSSKGSIRLID+RQSALCD+HSKLFEE E  G +SFFTEIIAS+SDIKFA+ GR++LSRDYMTLKLWDINMD+GPVATFQVHE+L+PKLCDLYENDSIFDKFECC+SG+G R ATGSYSNLFRVFGV
Sbjct:  196 NDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQSALCDSHSKLFEEPEQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTLKLWDINMDAGPVATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSYSNLFRVFGV 428          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABD_CHICK (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Gallus gallus GN=PPP2R2D PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.181e-85
Identity = 145/225 (64.44%), Postives = 189/225 (84.00%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+P++    +  + A  RRI+A+AH YHINSIS NSD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+  YSSSKG+IRL DMR SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+QVHE+LR KLC LYEND IFDKFECC +G  G + TGSY+N FR+F
Sbjct:  150 PFKITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMF 373          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_RABIT (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (Fragment) OS=Oryctolagus cuniculus GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 144/225 (64.00%), Postives = 184/225 (81.78%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+PV+    +  + A  RR++A+AH YHINSIS NSD ET++SADDLRINLWN EI+NQSFNIVD+KPANME+LTEVIT+AEFHP HCN   YSSSKG+IRL DMR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  112 PATITTLRVPVL-RPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF 335          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_PONAB (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Pongo abelii GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 144/225 (64.00%), Postives = 184/225 (81.78%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+PV+    +  + A  RR++A+AH YHINSIS NSD ET++SADDLRINLWN EI+NQSFNIVD+KPANME+LTEVIT+AEFHP HCN   YSSSKG+IRL DMR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  142 PATITTLRVPVL-RPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF 365          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_MOUSE (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Mus musculus GN=Ppp2r2b PE=1 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 144/225 (64.00%), Postives = 184/225 (81.78%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+PV+    +  + A  RR++A+AH YHINSIS NSD ET++SADDLRINLWN EI+NQSFNIVD+KPANME+LTEVIT+AEFHP HCN   YSSSKG+IRL DMR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  142 PATITTLRVPVL-RPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF 365          
BLAST of FC875393 vs. ExPASy Swiss-Prot
Match: 2ABB_MACFA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Macaca fascicularis GN=PPP2R2B PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 144/225 (64.00%), Postives = 184/225 (81.78%), Query Frame = 3
Query:   45 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 719
            P  +++LR+PV+    +  + A  RR++A+AH YHINSIS NSD ET++SADDLRINLWN EI+NQSFNIVD+KPANME+LTEVIT+AEFHP HCN   YSSSKG+IRL DMR SALCD H+K FEE E P  RSFF+EII+SISD+KF+ +GR+I++RDY+T+K+WD+NM++ P+ T+QVH++LR KLC LYEND IFDKFEC  +G    + TGSY+N FR+F
Sbjct:  142 PATITTLRVPVL-RPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTVKVWDLNMENRPIETYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMF 365          
The following BLAST results are available for this feature:
BLAST of FC875393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
2ABB_ARATH1.125e-12290.56Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABB_ORYSJ9.528e-12287.50Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABB_ORYSI9.528e-12287.50Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABA_ORYSJ2.869e-11884.43Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABA_ARATH7.066e-11786.70Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABD_CHICK4.181e-8564.44Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_RABIT1.345e-8364.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_PONAB1.345e-8364.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_MOUSE1.345e-8364.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
2ABB_MACFA1.345e-8364.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionC31403D10EF CTVClemen1 Citrus clementina cDNA clone C31403D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875393 ID=FC875393; Name=FC875393; organism=Citrus clementina; type=EST; length=725bp
GAGAGAGAAACTTTGGATGTGCAAGCAATGACTCGTCCTTCCCCCCGGGT
GGTGTTTCATCTCTACGTTTGCCTGTGGTAGTTACCAGTCAGGAGACAAA
TCTTGTTGCTGGATGTCGAAGAATATATGCACATGCACATGATTATCATA
TTAACTCGATTTCAAATAACAGTGATGGTGAGACCTTTATATCGGCCGAT
GACCTGCGAATAAATCTCTGGAATTTGGAAATTAGCAATCAGAGTTTTAA
TATCGTAGATGTGAAACCTGCAAACATGGAGGATCTTACTGAGGTGATTA
CTTCCGCAGAATTTCACCCCACCCACTGTAATATGTTGGCATATAGTAGC
TCAAAGGGCTCTATTCGTCTTATAGATATGCGGCAGTCAGCTTTATGCGA
TACTCATAGCAAATTGTTTGAGGAACAGGAAGCTCCCGGTACGAGGTCTT
TTTTCACGGAGATAATTGCCTCCATTTCAGATATCAAGTTTGCCAGGAAT
GGAAGACATATATTAAGTCGTGACTACATGACCCTCAAGTTATGGGACAT
AAATATGGATTCTGGTCCTGTTGCAACTTTCCAGGTTCATGAACATCTAA
GACCTAAGTTGTGTGATTTATATGAAAATGATTCTATCTTTGACAAATTT
GAGTGTTGTCTGAGCGGAGATGGGGGTCGGGTGGCTACTGGTTCCTACAG
CAATCTGTTTCGCGTGTTTGGTGTT
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