FC875399

Overview
NameFC875399
Unique NameFC875399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2195 contig Ccv1_Contig2195:49..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.773e-89
Identity = 152/215 (70.70%), Postives = 176/215 (81.86%), Query Frame = 1
Query:    4 VLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAP-LLPSDPYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIARVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGLE 645
            +LLDFWPSMFG+R+RIALAEK +KYEYKEEDL+NKSPLLLQMNP+HKKIPVLIHNG+P+CES I V+YI+EVWKDKAP LLPSDPY RAQARFW D+IDKK+YD  RK WTTKG             LK LEG LGDKP+FGG++FG+VD++LI +Y WFY YET G FS EAECPKF+A  KRC+QRE+VAK+LPD  KV EFV V+R   GLE
Sbjct:    7 ILLDFWPSMFGMRLRIALAEKEIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.040e-88
Identity = 150/215 (69.77%), Postives = 175/215 (81.40%), Query Frame = 1
Query:    4 VLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAP-LLPSDPYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIARVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGLE 645
            +LLDFWPSMFG+R+RIALAEK +KYEYK+EDL+NKSPLLLQMNP+HKKIPVLIHNG+P+CES I V+YI+EVWKDKAP LLPSDPY RAQARFW D+IDKK+YD  RK W TKG             LK LEG LGD+P+FGG++FG+VD++LI FY WFY YET G FS EAECPKF+A  KRC+QRE+VAK+LPD  KV EFV V+R   GLE
Sbjct:    7 ILLDFWPSMFGMRLRIALAEKEIKYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.848e-79
Identity = 135/211 (63.98%), Postives = 164/211 (77.73%), Query Frame = 1
Query:    4 VLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIARVKRCLQRETVAKALPDGKKVFEFVSVMRTNL 636
            VLLD W SM+G+R RIALAEKGV+YEYKEE+L N+SPLLLQMNP+HKKIPVLIHNG+P+CES IIVQYIDEVW DK+PL+PSDPY+R+QARFWVD+IDKK+YD+ +K W +KG            + K LE  L DKPF+G D FG+VDL LI F  WFYTYET G F +E ECPK +A VKRC++RETV+  LPD KKV+  +  ++  L
Sbjct:    6 VLLDTWASMYGMRARIALAEKGVRYEYKEENLMNRSPLLLQMNPIHKKIPVLIHNGKPICESAIIVQYIDEVWNDKSPLMPSDPYKRSQARFWVDYIDKKIYDTWKKMWLSKGEEHEEGKKELISIFKQLEETLTDKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKMEEECPKLMAWVKRCMERETVSNTLPDAKKVYGLIVELQKTL 216          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.457e-77
Identity = 128/213 (60.09%), Postives = 166/213 (77.93%), Query Frame = 1
Query:    4 VLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIARVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGL 642
            VLLDFWPS FG+R+RIALA KG+KYE KEE+L +KSPLLL+MNPVHKKIP+LIHN + +CES  I++YIDEVW DK PLLPSDPY+R+QARFW D+IDKK+Y + R+ W+ KG            +LKTLEG+LG+K +FGGDN G+VD++L+PF  WFY+YETC  FS+EAECPK +   K C++ E+V+K+LP   K++ FV  ++  LGL
Sbjct:    7 VLLDFWPSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNSKAICESLNILEYIDEVWHDKCPLLPSDPYERSQARFWADYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECPKLVVWAKTCMESESVSKSLPHPHKIYGFVLELKHKLGL 219          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.059e-72
Identity = 123/213 (57.75%), Postives = 163/213 (76.53%), Query Frame = 1
Query:    4 VLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIARVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGL 642
            VLLDF  S FG+R+RIALA KG+KYE KEE+L +KSPLLL+MNPVHKKIP+LIHNG+P+CES  I++YIDEVW +K PLLPSDPYQR+QARFW ++ID K+Y + R+ W+ KG            + KTLEG+LG+K +FGGDN G+VD++L+PF  WFY+YETC  FS+EAEC K +   + C++ E V+K+LP   K+++FV  ++  LGL
Sbjct:    7 VLLDFSGSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNGKPICESLNILEYIDEVWHEKCPLLPSDPYQRSQARFWANYIDNKIYSTGRRVWSGKGEDQEEAKKEFIEIFKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECRKLVV-WQNCMENERVSKSLPHPHKIYDFVLELKHKLGL 218          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.956e-58
Identity = 110/224 (49.11%), Postives = 148/224 (66.07%), Query Frame = 1
Query:    4 VLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLP-------SDPYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFF---GGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIARVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGLE 645
            VLLDFW S FG R RIA+AEKG+++EY+EEDL NKS LLL+ NPVH+KIPVL+H GRPV ES +I+QY+D+ +     LLP          Y RA ARFW D++D+K+YD   + W  KG            +L+TLE +LGD+ FF   GG   G+VD++L+PF  WFY+YE CG FSVE   P+  A  +RC + ++V K LP  +KV++FV V++   G+E
Sbjct:    8 VLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVVKHLPSPEKVYDFVGVLKKKYGVE 231          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.357e-58
Identity = 111/224 (49.55%), Postives = 151/224 (67.41%), Query Frame = 1
Query:    4 VLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLL-PSD------PYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFF---GGDNFGYVDLSLIPFYCWFYTYETCGKFSVEAECPKFIARVKRCLQRETVAKALPDGKKVFEFVSVMRTNLGLE 645
            VLLDFW S FG R RIA+AEKG+++EY+EEDL NKS LLL+ NPVH+KIPVL+H GRPV ES +I+QY+D+ +     LL P++       Y RA ARFW D++D+K+YD   + W  KG            +L+TLE +LGD+ FF   GG   G+VD++L+PF  WFY+YE CG FSVE   P+  A  +RC + ++VAK LP  +KV++FV V++   G+E
Sbjct:    8 VLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSVEEVAPRLAAWARRCGRIDSVAKHLPSPEKVYDFVGVLKKKYGVE 231          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.781e-35
Identity = 89/204 (43.63%), Postives = 117/204 (57.35%), Query Frame = 1
Query:    7 LLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYET-CGKFSVEAE-CPKFIARVKRCLQRETVAKALPDGKKVFEF 612
            LL FW S F  RV  AL  KGVKYEY EED  NKS LLLQ NPV+KK+PVLIHNG+P+ ES II++YIDE ++  + +LP DPY RA ARFW  F+D K+  +   T+  KG            +LK L+ +L DK FF GD FG+ D++      W   +E   G   V++E  P F       +    V ++LP   ++  F
Sbjct:    6 LLGFWYSPFSHRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPVYKKVPVLIHNGKPIVESMIILEYIDETFEGPS-ILPKDPYDRALARFWAKFLDDKV-AAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELLAF 207          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.326e-35
Identity = 78/163 (47.85%), Postives = 104/163 (63.80%), Query Frame = 1
Query:    7 LLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDS-SRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYE 492
            LL    S F  RV+IAL  KGV+Y++ EE+L NKS LLL+ NPVHKK+PV +HN +P+ ES +IV+YIDE WK+  P+LPSDPYQRA ARFW  FID K+  + S+  +T                L+ LE +L DK FFGG+ FG VD++ +    W   ++
Sbjct:   10 LLGIVGSPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNN-PILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKKFFGGEEFGLVDIAAVFIAFWIPIFQ 171          
BLAST of FC875399 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.326e-35
Identity = 79/162 (48.77%), Postives = 101/162 (62.35%), Query Frame = 1
Query:    7 LLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLIHNGRPVCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSSRKTWTTKGXXXXXXXXXXXXVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYE 492
            LL FW S F  RV  AL  KGVKYEY EED  NKS LLLQ NP+HKK+PVLIHNG+ + ES +I++YIDE ++  + +LP DPY RA ARFW  F+D K+  +  KT+  KG            +LK L+ +L DK FF GD FG+ D++      W   +E
Sbjct:    6 LLGFWYSPFSRRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPIHKKVPVLIHNGKRIVESMVILEYIDETFEGPS-ILPKDPYDRALARFWAKFLDDKV-PAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKKFFVGDKFGFADIAANLVAFWLGVFE 165          
The following BLAST results are available for this feature:
BLAST of FC875399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
GSTX4_TOBAC4.773e-8970.70Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXC_TOBAC4.040e-8869.77Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX3_SOYBN5.848e-7963.98Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTXA_TOBAC2.457e-7760.09Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX1_NICPL4.059e-7257.75Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTU1_ORYSJ1.956e-5849.11Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSI4.357e-5849.55Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTX2_TOBAC1.781e-3543.63Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX6_SOYBN2.326e-3547.85Probable glutathione S-transferase OS=Glycine max ... [more]
GSTX1_TOBAC2.326e-3548.77Probable glutathione S-transferase OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionC31403E04EF CTVClemen1 Citrus clementina cDNA clone C31403E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875399 ID=FC875399; Name=FC875399; organism=Citrus clementina; type=EST; length=724bp
GGGGTTCTGTTGGATTTCTGGCCCAGCATGTTTGGGATAAGGGTCAGGAT
TGCTCTGGCGGAGAAAGGCGTCAAGTATGAGTACAAGGAAGAGGACTTGA
AGAACAAGAGCCCCCTGCTTCTGCAGATGAACCCCGTTCACAAGAAGATC
CCGGTTCTCATCCACAACGGCAGACCGGTCTGTGAGTCACCCATCATTGT
TCAGTACATTGATGAAGTGTGGAAGGACAAGGCTCCATTGCTTCCCTCTG
ATCCCTACCAGAGAGCTCAAGCTAGGTTCTGGGTAGATTTCATTGACAAG
AAGATGTACGATTCTTCGAGGAAGACATGGACCACAAAGGGAGAAGAGCA
GGAGGCAGCTAAGAAGGAGTTCTTTGAAGTTCTGAAGACTTTGGAAGGGC
AGCTTGGAGACAAGCCTTTCTTTGGAGGAGACAATTTTGGGTATGTGGAT
TTAAGTTTGATCCCATTCTATTGTTGGTTTTACACGTATGAGACATGTGG
AAAGTTCAGCGTCGAGGCTGAGTGCCCCAAGTTCATAGCTCGGGTGAAGA
GATGCTTGCAGAGGGAGACTGTTGCCAAGGCACTTCCTGATGGGAAGAAA
GTGTTTGAATTTGTTTCAGTGATGAGGACAAATTTAGGATTGGAGTAGAG
AGAAAAGGGACATACCTAGGAGCTGAGAATAAGTCAGCAGCGCAATCGTG
CTGCCTGCTTATTCTTTAGTGGNT
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