FC875414

Overview
NameFC875414
Unique NameFC875414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875414_ssr142 microsatellite FC875414_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7839 contig Ccv1_Contig7839:19..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875414 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 53/88 (60.23%), Postives = 69/88 (78.41%), Query Frame = 1
Query:  340 QFSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRFSLSTIRLLMFLFKNPHDS-LRIGPKEFADLWSCLGQWR 597
            QFS+Y    F P THP+++RSFE  DR+RSGF++E+EL+QALS SGY   S  TIRLL+F++K P DS LR+GPKE+ +LW+CL QWR
Sbjct:   41 QFSSYS-GMFSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWR 127          
BLAST of FC875414 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  343 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWR 597
            F++   SAFPPGT P+++  F+  DRD SGFID+ ELQ ALSS  Q FS+ T+ LLM+LF N  +  +IGPKEF  L+  L  WR
Sbjct:  153 FASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTN-SNVRKIGPKEFTSLFFSLQNWR 236          
BLAST of FC875414 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  343 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWR 597
            F++   S F PGT P+++  F+  D+D SGFID+ ELQ ALSS  QRFS+ T+ LLM+LF N  ++++IGPKEF  L+  L  WR
Sbjct:  172 FASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTN-SNAMKIGPKEFTALFYSLQNWR 255          
The following BLAST results are available for this feature:
BLAST of FC875414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CML48_ARATH6.037e-2360.23Probable calcium-binding protein CML48 OS=Arabidop... [more]
CML49_ARATH2.222e-1752.94Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH1.440e-1650.59Probable calcium-binding protein CML50 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC31403F08EF CTVClemen1 Citrus clementina cDNA clone C31403F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875414 ID=FC875414; Name=FC875414; organism=Citrus clementina; type=EST; length=730bp
GGCCGGGGCTTCAGGAATTCCAGAAGTCTCTCTCACTTCTCACGTTTGTG
ATCTTGTTCTGCTCTGCTCATAGCGTTGACGTTTTAATTTTTGTAAGTAA
ATTATTAAAAAATCCGGTACCAAATCACAAATCATAATCACCATCATCAT
CATCGAATGTCAAATTACAGCGGATCCTACTCTTCATCTCAATCCTACGC
GCCCTCTGCGCCTTCTCTGCCGGAGACCCACAACAACTCCTCTTACAATA
ACTCATCTTCGGCTCAAAGCTATTATGCCCAGCCTCCTCCGCCTCCGCCG
CCGTCGCAGCAGCAGCCGTACCCCGCGCCGAGTCACGGGCAGTTTTCGGC
GTATGGGCACTCCGCGTTTCCGCCGGGGACCCACCCAGATGTGATAAGGA
GCTTTGAAATGGTTGATAGAGATAGAAGTGGGTTTATTGATGAGAATGAG
TTGCAGCAAGCACTTTCTTCTGGGTACCAGAGGTTTAGTCTCAGTACTAT
TAGATTGCTCATGTTTCTTTTCAAGAATCCTCATGATTCCTTGAGAATTG
GGCCTAAAGAATTTGCTGATTTGTGGAGTTGCCTTGGTCAATGGCGCGTA
AGTATCCTTACTGATTATTCTTTGAATTTTCAGAATCCTTCCAAGTAATT
GATGAAAAGTTATATTCCAAATTTTTTTCATGCAACTCTCTTTTGTCATG
CCTTTAACAACTAGCTTTCCGGCTATGCCT
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