FC875425

Overview
NameFC875425
Unique NameFC875425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2546 contig Ccv1_Contig2546:245..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875425 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 1.468e-107
Identity = 179/216 (82.87%), Postives = 194/216 (89.81%), Query Frame = 2
Query:    2 TGGRNVFDKLTTFHTASFAATGAGFIARDMTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVI 649
            TGG+++ D LTTFHTA+FAATGAGFI RDMTFEN+AGPAKHQAVALRVG DHAVVYRCN+IGYQD LYVHSNRQF+REC+IYGTVDFIFGNAAV+LQ C IYARKPMA QK TITAQNRKDPNQNTGISIH C L A PDL+ASKGS PTYLGRPWKLYSRVVYM++ MGDHI PRGWLEWNG FALD+LYYGEYMN G GS +G RV+WPGY VI
Sbjct:  338 TGGKSIADDLTTFHTATFAATGAGFIVRDMTFENYAGPAKHQAVALRVGGDHAVVYRCNIIGYQDALYVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMAQQKITITAQNRKDPNQNTGISIHACKLLATPDLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKWPGYHVI 553          
BLAST of FC875425 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 6.820e-105
Identity = 174/216 (80.56%), Postives = 195/216 (90.28%), Query Frame = 2
Query:    2 TGGRNVFDKLTTFHTASFAATGAGFIARDMTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVI 649
            +GG+++FD +TTFHTASFAATGAGFIARD+TFEN+AGPAKHQAVALR+GADHAV+YRCN+IGYQDTLYVHSNRQF+RECDIYGTVDFIFGNAAVVLQ C+IYARKPM  QKNTITAQNRKDPNQNTGISIH   + AA DLQA+ GS  TYLGRPWKL+SR VYM++Y+G H+  RGWLEWN  FALDTLYYGEY+NSGPGS +G RV WPGYRVI
Sbjct:  349 SGGKSIFDNITTFHTASFAATGAGFIARDITFENWAGPAKHQAVALRIGADHAVIYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMDFQKNTITAQNRKDPNQNTGISIHASRVLAASDLQATNGSTQTYLGRPWKLFSRTVYMMSYIGGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGSGLGQRVSWPGYRVI 564          
BLAST of FC875425 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 2.885e-79
Identity = 139/216 (64.35%), Postives = 170/216 (78.70%), Query Frame = 2
Query:    2 TGGRNVFDKLTTFHTASFAATGAGFIARDMTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQ-ASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRV 646
            +G R+  D  TTF +A+FA +G GFIARD+TFEN AGP KHQAVALR  +D +V YRCN+ GYQDTLY H+ RQFYR+C I GTVDFIFG+A VV Q C I A+K + NQKN+ITAQ RKDPN+ TGISI  C++ A  DL+ AS  S PTYLGRPWKLYSR V M +++ + I+P GWLEWNGDFAL++L+YGEYMN GPG+ +G RV+WPGY+V
Sbjct:  272 SGNRSFVDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFYRCNIRGYQDTLYTHTMRQFYRDCKISGTVDFIFGDATVVFQNCQILAKKGLPNQKNSITAQGRKDPNEPTGISIQFCNITADSDLEAASVNSTPTYLGRPWKLYSRTVIMQSFLSNVIRPEGWLEWNGDFALNSLFYGEYMNYGPGAGLGSRVKWPGYQV 487          
BLAST of FC875425 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.922e-79
Identity = 139/214 (64.95%), Postives = 161/214 (75.23%), Query Frame = 2
Query:    5 GGRNVFDKLTTFHTASFAATGAGFIARDMTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRV 646
            G R+V D  TTF +++ A  G GFIAR ++FEN+AGP+KHQAVALR GAD +  Y+C+ +GYQDTLYVHS RQFY ECD+YGT+DFIFGNAA VLQKC +YARKP  NQKN  TAQ R DPNQNTGISI +C + AA DL     S  TYLGRPWK YSR V++L+ M   I P GWLEW+GDFAL TLYY EY N+GPGS    RV WPGY V
Sbjct:   74 GNRSVVDGWTTFRSSTVAVVGTGFIARGISFENYAGPSKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYSECDVYGTIDFIFGNAAAVLQKCNLYARKPNENQKNIFTAQGRDDPNQNTGISILNCKVAAAADLIPVLSSFKTYLGRPWKEYSRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAV 287          
BLAST of FC875425 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 8.395e-79
Identity = 137/216 (63.43%), Postives = 161/216 (74.54%), Query Frame = 2
Query:    2 TGGRNVFDKLTTFHTASFAATGAGFIARDMTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVI 649
            TG R+V D  TTF++A+FA T   F+A ++TF N AGP KHQAVALR GAD ++ Y C+   YQDTLY HS RQFYRECD+YGTVDFIFGNAAVV Q C +Y RKPM NQ N ITAQ R DPNQNTG SI +C++  A DL +S  ++ TYLGRPWK YSR VYM +Y+   ++P GW EWNGDFAL TLYY EY N+GPGS   +RV WPGY VI
Sbjct:  331 TGNRSVVDGWTTFNSATFAVTAPNFVAVNITFRNTAGPEKHQAVALRSGADFSIFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYPRKPMPNQFNAITAQGRSDPNQNTGTSIQNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVI 546          
BLAST of FC875425 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 3.190e-78
Identity = 137/216 (63.43%), Postives = 162/216 (75.00%), Query Frame = 2
Query:    2 TGGRNVFDKLTTFHTASFAATGAGFIARDMTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVI 649
            TG RNV D  TTF++A+FA T   F+A +MTF N AGP KHQAVA+R  AD ++ Y C+   YQDTLY HS RQFYRECDIYGTVDFIFGNAAVV Q C +Y R+PM NQ N ITAQ R DPNQNTGISIH+C++  A DL +S  ++ TYLGRPWK YSR V+M +Y+ + ++P GW EWNGDFAL TLYY EY N+G GS+   RV WPGY VI
Sbjct:  325 TGNRNVVDGWTTFNSATFAVTSPNFVAVNMTFRNTAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVVWPGYHVI 540          
BLAST of FC875425 vs. ExPASy Swiss-Prot
Match: PME25_ARATH (Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.190e-78
Identity = 138/216 (63.89%), Postives = 160/216 (74.07%), Query Frame = 2
Query:    2 TGGRNVFDKLTTFHTASFAATGAGFIARDMTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVI 649
            TG  NV D  TT++ +SFA  G  F+A D+TF N AGP KHQAVALR  A+ +  YRC+  GYQDTLYVHS RQFYRECDIYGTVDFIFGNAA + Q C IYARKPMA QKN ITA  R DPNQNTGISI +C++ AAPDL A   S  T+LGRPWK YSR V+M +Y+ D +QP GWLEWNG   LDT+YYGEY N GPG+    RV+W GY ++
Sbjct:  369 TGNHNVVDGWTTYNCSSFAVVGERFMAVDVTFRNTAGPEKHQAVALRNNAEGSSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIYARKPMAKQKNAITAHGRLDPNQNTGISIINCTIKAAPDLAAEPKSAMTFLGRPWKPYSRTVFMQSYISDIVQPVGWLEWNGTIGLDTIYYGEYSNFGPGANTNQRVQWLGYNLL 584          
BLAST of FC875425 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 7.107e-78
Identity = 137/216 (63.43%), Postives = 166/216 (76.85%), Query Frame = 2
Query:    2 TGGRNVFDKLTTFHTASFAATGAGFIARDMTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVI 649
            TG ++V    TTF +A+ A  G  FIARD+T  N AGP  HQAVALR G+D +V YRC+  GYQDTLYVHS RQFYRECDIYGTVDFIFGNAAVVLQ C I+ARKP  N+ NT+TAQ R DPNQ+TGI IH+C + AA DL+  + S+ T+LGRPWK YSR VY+ T++   I P GW+EW+GDFAL+TLYY EYMN+GPGS+  +RV+W GY V+
Sbjct:  264 TGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVL 478          
BLAST of FC875425 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.340e-76
Identity = 134/216 (62.04%), Postives = 158/216 (73.15%), Query Frame = 2
Query:    2 TGGRNVFDKLTTFHTASFAATGAGFIARDMTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVI 649
            TG  NV D  TTFH+A+ AA G GFI +D+  +N AGPAKHQAVALRVGAD +V+ RC +  YQDTLY HS RQFYR+  + GT+DFIFGNAAVV QKC + ARKP   Q+N +TAQ R DPNQ TG SI  C + A+PDL+      PTYLGRPWK YSR V M +Y+G  I P GW EW+GDFAL TLYYGE+MN+GPG+    RV+WPGY VI
Sbjct:  301 TGSLNVVDGSTTFHSATLAAVGKGFILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCDIIASPDLKPVVKEFPTYLGRPWKKYSRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVI 516          
BLAST of FC875425 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 3.900e-76
Identity = 134/216 (62.04%), Postives = 161/216 (74.54%), Query Frame = 2
Query:    2 TGGRNVFDKLTTFHTASFAATGAGFIARDMTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVI 649
            TG R+  D  TTF +A+FA +G GFIARD+TF+N AGP KHQAVA+R   D  V YRC + GYQDTLY HS RQF+REC I GTVDFIFG+A  V Q C I A++ + NQKN+ITAQ RKDPN+ TG +I   ++ A  DL  +  +  TYLGRPWKLYSR V+M  YM D I P GWLEWNG+FALDTLYYGEYMNSGPG+++  RV+WPGY V+
Sbjct:  278 TGNRSFIDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVAIRSDTDLGVFYRCAMRGYQDTLYAHSMRQFFRECIITGTVDFIFGDATAVFQSCQIKAKQGLPNQKNSITAQGRKDPNEPTGFTIQFSNIAADTDLLLNLNTTATYLGRPWKLYSRTVFMQNYMSDAINPVGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVL 493          
The following BLAST results are available for this feature:
BLAST of FC875425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME61_ARATH1.468e-10782.87Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME34_ARATH6.820e-10580.56Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME_PRUPE2.885e-7964.35Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME_ACTDE4.922e-7964.95Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME7_ARATH8.395e-7963.43Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME41_ARATH3.190e-7863.43Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME25_ARATH3.190e-7863.89Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME2_CITSI7.107e-7863.43Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME21_SOLLC1.340e-7662.04Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME32_ARATH3.900e-7662.04Probable pectinesterase/pectinesterase inhibitor 3... [more]

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Properties
Property NameValue
Genbank descriptionC31403G07EF CTVClemen1 Citrus clementina cDNA clone C31403G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875425 ID=FC875425; Name=FC875425; organism=Citrus clementina; type=EST; length=656bp
AACAGGTGGAAGAAATGTTTTCGACAAGTTGACGACATTCCACACCGCAT
CATTTGCGGCGACTGGAGCTGGCTTTATCGCTCGGGACATGACGTTTGAG
AACTTTGCGGGACCGGCGAAGCACCAAGCGGTGGCCCTCCGCGTCGGCGC
CGACCACGCGGTGGTGTACCGCTGCAACGTAATCGGTTACCAAGACACCC
TCTACGTGCACTCAAACCGGCAGTTCTACCGCGAGTGCGACATCTACGGC
ACCGTGGACTTCATCTTCGGGAACGCCGCCGTGGTCTTACAGAAATGCGC
CATCTACGCTCGCAAGCCGATGGCCAATCAGAAGAACACCATCACGGCGC
AGAACAGGAAAGACCCTAATCAGAACACGGGCATCTCAATCCACGACTGC
AGCCTCTACGCCGCCCCCGATCTTCAGGCGTCCAAAGGCAGCATCCCCAC
GTACTTAGGCAGGCCGTGGAAGCTCTACTCGAGGGTTGTGTACATGCTAA
CGTACATGGGTGACCACATCCAACCCAGAGGCTGGCTTGAATGGAATGGA
GACTTTGCACTGGATACTTTATACTACGGCGAGTACATGAACTCCGGCCC
GGGTTCGGCCGTGGGTCACCGGGTGAGGTGGCCGGGTTACCGGGTTATAC
GTCGGC
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