FC875437

Overview
NameFC875437
Unique NameFC875437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10229 contig Ccv1_Contig10229:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875437 vs. ExPASy Swiss-Prot
Match: F10AL_ARATH (FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.971e-52
Identity = 101/148 (68.24%), Postives = 117/148 (79.05%), Query Frame = 2
Query:  206 DVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 649
            D +EPDNDP QKMGD SVEVT+E R+AA   K KA++ +SEG  ++AI  LT AI LNPTSAI+Y  RA VY+KL KPNAAIRDA  ALE NPDSAKGYK RGMARA LG+W EAA DLH+AS +DYDEEI   LKKVEPNA +++EH
Sbjct:   96 DTVEPDNDPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEHLTRAITLNPTSAIMYGNRASVYIKLKKPNAAIRDANAALEINPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEEISAVLKKVEPNAHKLEEH 243          
BLAST of FC875437 vs. ExPASy Swiss-Prot
Match: F10A1_CHICK (Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.865e-43
Identity = 88/150 (58.67%), Postives = 110/150 (73.33%), Query Frame = 2
Query:  200 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 649
            N  V+EPDND  Q+MGD +VEVTEEM D AN  K++A++ +SEG L+ A+   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A++ NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    LK+V+P A++I EH
Sbjct:   83 NEGVIEPDNDDPQEMGDENVEVTEEMMDQANEKKMEAINALSEGDLQKAVNLFTDAIKLNPCLAILYAKRASVFVKLQKPNAAIRDCDRAIKINPDSAQTYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEH 232          
BLAST of FC875437 vs. ExPASy Swiss-Prot
Match: F10A5_HUMAN (Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.947e-41
Identity = 84/147 (57.14%), Postives = 108/147 (73.47%), Query Frame = 2
Query:  209 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 649
            V+EPD D  Q+MGD +VE+TEEM D AN  K+ A++++++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAI+D   A+E NPDSA+ YK RG A   LG WEEAA+DL  A KLDYDE+    LK+V+P A++I EH
Sbjct:   88 VIEPDTDAPQEMGDENVEITEEMMDQANDKKVAAIEVLNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIQDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAFACKLDYDEDASAMLKEVQPRAQKIAEH 234          
BLAST of FC875437 vs. ExPASy Swiss-Prot
Match: F10A1_PONAB (Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.947e-41
Identity = 84/147 (57.14%), Postives = 107/147 (72.79%), Query Frame = 2
Query:  209 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 649
            V+EPD D  Q+MGD + E+TEEM D AN  K+ A++ +++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    LK+V+P A++I EH
Sbjct:   88 VIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPKAQKIAEH 234          
BLAST of FC875437 vs. ExPASy Swiss-Prot
Match: F10A1_HUMAN (Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.947e-41
Identity = 84/147 (57.14%), Postives = 107/147 (72.79%), Query Frame = 2
Query:  209 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 649
            V+EPD D  Q+MGD + E+TEEM D AN  K+ A++ +++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    LK+V+P A++I EH
Sbjct:   88 VIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEH 234          
BLAST of FC875437 vs. ExPASy Swiss-Prot
Match: F10A1_MOUSE (Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.325e-40
Identity = 84/150 (56.00%), Postives = 107/150 (71.33%), Query Frame = 2
Query:  200 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 649
            N  V+EPD D  Q+MGD + E+TEEM D AN  K  A++ +++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    L++V+P A++I EH
Sbjct:   84 NEGVIEPDTDAPQEMGDENAEITEEMMDEANEKKGAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLREVQPRAQKIAEH 233          
BLAST of FC875437 vs. ExPASy Swiss-Prot
Match: F10A4_HUMAN (Protein FAM10A4 OS=Homo sapiens GN=FAM10A4 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 82/147 (55.78%), Postives = 106/147 (72.11%), Query Frame = 2
Query:  209 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 649
            V+EPD D  Q+MGD + E+TEE+ D AN  K+ A++ +++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+DL +A K DYDE+    LK+V+P A++I EH
Sbjct:   84 VIEPDTDAPQEMGDENAEITEEVMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKRRGKAHRLLGHWEEAAHDLALACKFDYDEDASAMLKEVQPRAQKIAEH 230          
BLAST of FC875437 vs. ExPASy Swiss-Prot
Match: F10A1_RAT (Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.499e-39
Identity = 83/150 (55.33%), Postives = 104/150 (69.33%), Query Frame = 2
Query:  200 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQEH 649
            N  V+E D D  Q+MGD + E+TE M D AN  K  A+D +++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA DL +A KLDYDE+    L++V+P A++I EH
Sbjct:   84 NEGVIEADTDAPQEMGDENAEITEAMMDEANEKKGAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREVQPRAQKIAEH 233          
BLAST of FC875437 vs. ExPASy Swiss-Prot
Match: HRP_PLABE (58 kDa phosphoprotein OS=Plasmodium berghei PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 2
Query:  260 EVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQE 646
            E++EE  +     K +AVDL+   K E+A+ +  + I     SA++Y  RA + + L +P A IRD   AL  N DSA  YKIR  A   LG+WE A  D+    K+DYDE +    K ++   ++I E
Sbjct:  104 ELSEEQIEEICKLKEEAVDLVENKKYEEALEKYNKIISFGNPSAMIYTKRASILLNLKRPKACIRDCTEALNLNVDSANAYKIRAKAYRYLGKWEFAHADMEQGQKIDYDENLWDMQKLIQEKYKKIYE 232          
The following BLAST results are available for this feature:
BLAST of FC875437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
F10AL_ARATH1.971e-5268.24FAM10 family protein At4g22670 OS=Arabidopsis thal... [more]
F10A1_CHICK4.865e-4358.67Hsc70-interacting protein OS=Gallus gallus GN=ST13... [more]
F10A5_HUMAN5.947e-4157.14Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV... [more]
F10A1_PONAB5.947e-4157.14Hsc70-interacting protein OS=Pongo abelii GN=ST13 ... [more]
F10A1_HUMAN5.947e-4157.14Hsc70-interacting protein OS=Homo sapiens GN=ST13 ... [more]
F10A1_MOUSE1.325e-4056.00Hsc70-interacting protein OS=Mus musculus GN=St13 ... [more]
F10A4_HUMAN5.035e-4055.78Protein FAM10A4 OS=Homo sapiens GN=FAM10A4 PE=1 SV... [more]
F10A1_RAT2.499e-3955.33Hsc70-interacting protein OS=Rattus norvegicus GN=... [more]
HRP_PLABE2.688e-1737.2158 kDa phosphoprotein OS=Plasmodium berghei PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionC31403H09EF CTVClemen1 Citrus clementina cDNA clone C31403H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875437 ID=FC875437; Name=FC875437; organism=Citrus clementina; type=EST; length=699bp
GAATATATAGCAGAGATAAAGCTCTTGATCAACCCTACTGCAAATCAAAA
TCAATACCTTTTTTCAAGTCCTATCTTCATAGAAAGAGGATAAAAGTGGT
GTTGACATGTCCGACTCTGTTAAGCATTTTGAAGCAATGAAGTCCAATTT
ATCAACTGAAGATGATGACGACATTGTGGAGTCTGATATTGAGTTGGATA
ATACTGATGTTATGGAGCCCGACAATGATCCTTCACAAAAGATGGGAGAC
CCGTCAGTTGAAGTTACAGAAGAAATGCGTGATGCAGCAAATATGACAAA
ACTAAAAGCAGTAGATTTGATCTCTGAAGGCAAGTTGGAGGATGCCATAG
GACAACTAACAGAAGCCATAATGTTGAATCCTACTTCAGCAATACTTTAT
GCAGCTCGAGCTGGTGTCTATGTTAAACTAAACAAACCTAATGCTGCAAT
CCGCGATGCTTATGTAGCTTTAGAGACTAACCCTGACTCAGCAAAAGGAT
ATAAAATACGTGGGATGGCAAGGGCCAGGTTGGGCCAGTGGGAAGAAGCT
GCAAATGATTTGCATGTGGCATCAAAGTTAGACTACGATGAGGAGATTGG
CATGGCACTCAAGAAGGTTGAACCTAATGCTCGTAGAATTCAAGAACATC
GAAGAAAATATGAACGGCTGCGTAAAGAAAGGGAGCTAAAAATTTTGAA
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