FC875442

Overview
NameFC875442
Unique NameFC875442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10230 contig Ccv1_Contig10230:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875442 vs. ExPASy Swiss-Prot
Match: SPL13_ARATH (Squamosa promoter-binding-like protein 13 OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 1 
Query:  364 MDWNLKPAWDFTE-FEQEAIPNVDAVDES-----SNRTKGNFSVDLKLGQVNSSAED---------SLNKCKEPGASKMESPSPSGSFKRARAANNGS-QTASCLVDGCDSDLSNCRDYIGAISV-*AHSKTP 711
            MDWN K +  +   F+QE  P++  +D S     S+++K +FS DLKLG+   ++           SL+K K+   +K E  S S S KR R    G+ Q   CLVDGCDSD SNCR+Y     V   HSKTP
Sbjct:    1 MDWNFKLSSGYLSGFDQE--PDLSPMDGSISFGGSSQSKADFSFDLKLGRNIGNSSSVFGDTEQVISLSKWKDSALAKPEG-SRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTP 130
The following BLAST results are available for this feature:
BLAST of FC875442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPL13_ARATH1.363e-1140.60Squamosa promoter-binding-like protein 13 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC31404A02EF CTVClemen1 Citrus clementina cDNA clone C31404A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875442 ID=FC875442; Name=FC875442; organism=Citrus clementina; type=EST; length=720bp
GAAAGAAAACTTAAACAATAAAATAATGAAGTTCAACTTATTAAAAAACT
AAGTAAACTTCATAAGAGAGCACTTCTTCTCTTTCACCAACCATCTTCTT
AGCCTTTCTACATTCAAGTTTATAGGATTTCTTCAAAAAAAAAAATATAT
ATTATTTTATTTTTATCTTTGAGTCTTGACTTAAGCCACTTTATTGGTTA
GTGATGGAATCAATGTCAGTGAATAAATGGCTGCAAAGAGAAACCAGTCT
CCATATGCTGAACCTGTCTTGAAAGAGAAGCATGATTGGCTTTGGCTATG
TTTGAGAAGGTGTGGAGGGAATTAATTAAAGAATAAAGTCCAACTCTTCA
ATTGTTGGAGTTTATGGACTGGAACTTGAAACCAGCTTGGGATTTTACTG
AATTTGAGCAAGAAGCTATTCCTAACGTAGATGCAGTTGATGAGTCAAGT
AACAGGACAAAAGGGAATTTCTCAGTTGATTTGAAGCTGGGTCAGGTTAA
TAGTTCGGCTGAAGATTCGTTGAATAAGTGTAAGGAGCCTGGTGCCTCAA
AAATGGAGTCTCCTTCACCTTCAGGGTCATTCAAGAGGGCCAGAGCAGCT
AACAATGGAAGCCAGACTGCGTCATGTCTTGTTGATGGGTGTGACTCGGA
CCTTAGTAATTGTAGGGATTACATAGGCGCCATAAGTGTGTGAGCTCACT
CGAAGACGCCTCAGTTTGAT
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