FC875443

Overview
NameFC875443
Unique NameFC875443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10231 contig Ccv1_Contig10231:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: HSP7M_SOLTU (Heat shock 70 kDa protein, mitochondrial OS=Solanum tuberosum GN=HSP68 PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 4.364e-94
Identity = 168/201 (83.58%), Postives = 183/201 (91.04%), Query Frame = 1
Query:   67 MATSVLLRQLRRREVASAPISAYKCFTSNVKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            MAT+ LLR LRRRE A++ ISAY+   SN KPSW PS +G  WA L RPFSSKPAGN+IIGIDLGTTNSCVA+MEGKNPKVIENSEG+RTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTL GTKRLIGR+FDDPQTQKEM+MV YKIVR  NGDAWVEANGQQYSP+QIGAF+LTKMKETAE+YLGKS++KAVITVPAYF
Sbjct:    1 MATAALLRSLRRREFATSSISAYRTLASNTKPSWCPSLVGAKWAGLARPFSSKPAGNEIIGIDLGTTNSCVAVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLSGTKRLIGRRFDDPQTQKEMKMVPYKIVRGSNGDAWVEANGQQYSPTQIGAFILTKMKETAEAYLGKSINKAVITVPAYF 201          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: HSP7M_PHAVU (Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 7.209e-89
Identity = 160/198 (80.81%), Postives = 181/198 (91.41%), Query Frame = 1
Query:   76 SVLLRQLRRREVASAPISAYKCFTSNVKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            + +LR LRRR+VASA  SAY+  T + KP++    + + W+ L RPFSS+PAGND+IGIDLGTTNSCV++MEGKNPKVIENSEG+RTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT+FGTKRLIGR+FDDPQTQKEM+MV +KIV+APNGDAWVEANGQQYSPSQIGAFVLTKMKETAE+YLGKSVSKAVITVPAYF
Sbjct:    2 AAVLRSLRRRDVASATFSAYRSLTGSTKPAY----VAQKWSCLARPFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYF 195          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: HSP7M_PEA (Heat shock 70 kDa protein, mitochondrial OS=Pisum sativum GN=HSP1 PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 5.712e-86
Identity = 157/198 (79.29%), Postives = 179/198 (90.40%), Query Frame = 1
Query:   76 SVLLRQLRRREVASAPISAYKCFTSNVKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            + LLR L+RR ++S+ +SA++  T + K S+A   L    ASLTRPFSS+PAGND+IGIDLGTTNSCV++MEGKNPKVIENSEG+RTTPSVVAFNQK ELLVGTPAKRQAVTNPTNTLFGTKRLIGR+FDD QTQKEM+MV YKIVRAPNGDAWVEANGQQYSPSQIGAFVLTK+KETAE+YLGK++SKAV+TVPAYF
Sbjct:    3 ATLLRSLQRRNLSSSSVSAFRSLTGSTKTSYATHKL----ASLTRPFSSRPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKSELLVGTPAKRQAVTNPTNTLFGTKRLIGRRFDDAQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKIKETAEAYLGKTISKAVVTVPAYF 196          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: HSP7F_CAEEL (Heat shock 70 kDa protein F, mitochondrial OS=Caenorhabditis elegans GN=hsp-6 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.490e-59
Identity = 112/163 (68.71%), Postives = 133/163 (81.60%), Query Frame = 1
Query:  181 LGKSWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            + +S     R  S KP G+ +IGIDLGTTNSCV++MEGK PKVIEN+EG RTTPS VAF   GE LVG PAKRQAVTN  NTLF TKRLIGR+++DP+ QK++++V YKIV+A NGDAWVEA G+ YSPSQ+GAFVL KMKETAESYLG +V+ AV+TVPAYF
Sbjct:   14 IARSSLMSARSLSDKPKGH-VIGIDLGTTNSCVSIMEGKTPKVIENAEGVRTTPSTVAFTADGERLVGAPAKRQAVTNSANTLFATKRLIGRRYEDPEVQKDLKVVPYKIVKASNGDAWVEAQGKVYSPSQVGAFVLMKMKETAESYLGTTVNNAVVTVPAYF 175          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: DNAK_PARL1 (Chaperone protein dnaK OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=dnaK PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.262e-58
Identity = 111/143 (77.62%), Postives = 123/143 (86.01%), Query Frame = 1
Query:  241 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            +IGIDLGTTNSCVA+MEG + KVIENSEG RTTPS+VAF Q GE LVG  AKRQAVTNPTNTLF  KRLIGR +DDP TQK+  MV Y IV+APNGDAWVEA+G++YSPSQI AF+L KMKETAESYLG+ V KAVITVPAYF
Sbjct:    4 VIGIDLGTTNSCVAVMEGSSAKVIENSEGMRTTPSMVAFTQDGERLVGQSAKRQAVTNPTNTLFAIKRLIGRSYDDPTTQKDKGMVPYDIVKAPNGDAWVEAHGEKYSPSQISAFILQKMKETAESYLGEKVEKAVITVPAYF 146          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: HSP77_YEAST (Heat shock protein SSC1, mitochondrial OS=Saccharomyces cerevisiae GN=SSC1 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.039e-58
Identity = 113/165 (68.48%), Postives = 134/165 (81.21%), Query Frame = 1
Query:  175 SNLGKSWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            S+L  S+   TR  S+K  G+ +IGIDLGTTNS VA+MEGK PK+IEN+EGSRTTPSVVAF ++GE LVG PAKRQAV NP NTLF TKRLIGR+F+D + Q++++ V YKIV+  NGDAWVEA GQ YSP+QIG FVL KMKETAE+YLGK V  AV+TVPAYF
Sbjct:   11 SSLSSSFRIATRLQSTKVQGS-VIGIDLGTTNSAVAIMEGKVPKIIENAEGSRTTPSVVAFTKEGERLVGIPAKRQAVVNPENTLFATKRLIGRRFEDAEVQRDIKQVPYKIVKHSNGDAWVEARGQTYSPAQIGGFVLNKMKETAEAYLGKPVKNAVVTVPAYF 174          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: GRP75_PONAB (Stress-70 protein, mitochondrial OS=Pongo abelii GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 107/154 (69.48%), Postives = 128/154 (83.12%), Query Frame = 1
Query:  208 RPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            R ++S+     ++GIDLGTTNSCVA+MEGK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQAVTNP NT + TKRLIGR++DDP+ QK+++ V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYF
Sbjct:   44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYF 197          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: GRP75_HUMAN (Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 107/154 (69.48%), Postives = 128/154 (83.12%), Query Frame = 1
Query:  208 RPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            R ++S+     ++GIDLGTTNSCVA+MEGK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQAVTNP NT + TKRLIGR++DDP+ QK+++ V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYF
Sbjct:   44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYF 197          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: GRP75_BOVIN (Stress-70 protein, mitochondrial OS=Bos taurus GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.501e-57
Identity = 107/154 (69.48%), Postives = 128/154 (83.12%), Query Frame = 1
Query:  208 RPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            R ++S+     ++GIDLGTTNSCVA+MEGK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQAVTNP NT + TKRLIGR++DDP+ QK+++ V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYF
Sbjct:   44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYF 197          
BLAST of FC875443 vs. ExPASy Swiss-Prot
Match: GRP75_RAT (Stress-70 protein, mitochondrial OS=Rattus norvegicus GN=Hspa9 PE=1 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 4.266e-57
Identity = 107/154 (69.48%), Postives = 127/154 (82.47%), Query Frame = 1
Query:  208 RPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYF 669
            R ++S+     ++GIDLGTTNSCVA+MEGK  KV+EN+EG+RTTPSVVAF   GE LVG PAKRQAVTNP NT + TKRLIGR++DDP+ QK+ + V +KIVRA NGDAWVEA+G+ YSPSQIGAFVL KMKETAE+YLG +   AVITVPAYF
Sbjct:   44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTPDGERLVGMPAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWVEAHGKLYSPSQIGAFVLMKMKETAENYLGHTAKNAVITVPAYF 197          
The following BLAST results are available for this feature:
BLAST of FC875443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7M_SOLTU4.364e-9483.58Heat shock 70 kDa protein, mitochondrial OS=Solanu... [more]
HSP7M_PHAVU7.209e-8980.81Heat shock 70 kDa protein, mitochondrial OS=Phaseo... [more]
HSP7M_PEA5.712e-8679.29Heat shock 70 kDa protein, mitochondrial OS=Pisum ... [more]
HSP7F_CAEEL3.490e-5968.71Heat shock 70 kDa protein F, mitochondrial OS=Caen... [more]
DNAK_PARL12.262e-5877.62Chaperone protein dnaK OS=Parvibaculum lavamentivo... [more]
HSP77_YEAST5.039e-5868.48Heat shock protein SSC1, mitochondrial OS=Saccharo... [more]
GRP75_PONAB2.501e-5769.48Stress-70 protein, mitochondrial OS=Pongo abelii G... [more]
GRP75_HUMAN2.501e-5769.48Stress-70 protein, mitochondrial OS=Homo sapiens G... [more]
GRP75_BOVIN2.501e-5769.48Stress-70 protein, mitochondrial OS=Bos taurus GN=... [more]
GRP75_RAT4.266e-5769.48Stress-70 protein, mitochondrial OS=Rattus norvegi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404A03EF CTVClemen1 Citrus clementina cDNA clone C31404A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875443 ID=FC875443; Name=FC875443; organism=Citrus clementina; type=EST; length=675bp
GGTCGAACTAAATCTCTGTTTCTCCTCACACGCAGCTGAAACAGATCGAT
TCAGCGACCTTTAGCTATGGCCACCTCCGTTCTGCTTCGACAATTACGGC
GCCGTGAAGTTGCCTCCGCCCCCATCTCCGCCTACAAATGCTTTACTAGC
AATGTTAAGCCCTCATGGGCCCCTTCTAATCTGGGTAAAAGTTGGGCGAG
TTTGACTAGACCTTTCAGTTCAAAACCTGCTGGTAATGACATTATTGGAA
TTGATCTCGGAACTACCAACTCATGTGTTGCACTTATGGAGGGAAAGAAC
CCCAAAGTTATTGAGAACTCCGAAGGATCTAGGACTACACCATCAGTTGT
AGCTTTCAATCAGAAGGGAGAGCTACTTGTGGGTACACCAGCAAAGCGTC
AGGCTGTGACCAACCCAACTAACACGCTCTTTGGCACCAAGCGTTTAATT
GGTAGAAAATTTGATGATCCCCAGACGCAAAAAGAAATGCAGATGGTTTC
ATATAAGATAGTAAGGGCCCCCAATGGGGATGCTTGGGTTGAAGCCAATG
GGCAGCAGTACTCGCCAAGTCAGATTGGGGCCTTTGTTCTGACCAAGATG
AAAGAAACTGCAGAATCCTACCTTGGAAAGTCAGTTTCAAAAGCAGTAAT
CACAGTTCCAGCTTATTTCACGATG
back to top