FC875492

Overview
NameFC875492
Unique NameFC875492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875492_ssr25 microsatellite FC875492_ssr25:25..38. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr124 microsatellite FC875492_ssr124:124..138. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875492_ssr185 microsatellite FC875492_ssr185:185..196. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10238 contig Ccv1_Contig10238:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.372e-73
Identity = 133/178 (74.72%), Postives = 152/178 (85.39%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            AAD +MLQDVCVADL S +KVNGFPCK NF+  DF S  ++KP ATNN FGS VT ANV+ +PGLNTLGVSLARIDYAPGGINPPHTHPRA+E+VFV+EG+LDVGF TTANVLVSK I KGE FVFPRGLVHFQKNNG VPA+VI+ FNSQL GTQ+I +TLF ++PPV + VL +TF
Sbjct:   32 AADEDMLQDVCVADLHSKVKVNGFPCKTNFTAADFSSLAISKPGATNNKFGSVVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTANVLVSKKIIKGEVFVFPRGLVHFQKNNGEVPAAVISAFNSQLPGTQSIPITLFGASPPVPDDVLAQTF 209          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: NEC1_NICPL (Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.087e-72
Identity = 130/178 (73.03%), Postives = 151/178 (84.83%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            AAD +MLQDVCVADL S +KVNGFPCK NF+  DF S  ++KP ATNN FGS VT ANV+ +PGLNTLGVSLARIDYAPGGINPPHTHPRA+E+VFV+EG+LDVGF TTANVLVSK I KGE FVFPRGLVHFQKNNG +PA+V++ FNSQL GTQ+I +TLF ++P V + VL +TF
Sbjct:   32 AADEDMLQDVCVADLHSKVKVNGFPCKTNFTAADFSSFAISKPGATNNKFGSKVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMVFVMEGELDVGFITTANVLVSKQITKGEVFVFPRGLVHFQKNNGKIPAAVVSAFNSQLPGTQSIPITLFGASPTVPDDVLAQTF 209          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 3.292e-69
Identity = 133/183 (72.68%), Postives = 148/183 (80.87%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTFPDG 732
            AAD + LQD+CVAD  S I VNGF CK  +N +  DFFS+ L K  ATNNTFGS VT ANVQ IPGLNTLGVS+ARIDYAPGG+NPPHTHPRATE+VFVLEGQLDVGF TT N L++K+I KGE FVFP+GLVHFQKNNG  PA+VIAGFNSQL GT NI LTLF +TPPV + VLTK F  G
Sbjct:   20 AADADALQDLCVADYASVILVNGFACKPASNVTAEDFFSNLLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVGFITTTNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLFNATPPVPDNVLTKAFQIG 202          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.209e-68
Identity = 127/178 (71.35%), Postives = 143/178 (80.34%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP+MLQDVCVADL SP+K+NGFPCKAN +  DFF   L  P  TNN  GS VTAANVQ+ PG+NTLGVS+ARIDYAPGG NPPHTHPRATEI+FVLEG L+VGF TTAN L +K++  GE FVFPRGLVHFQ+N G+ PA+VIA FNSQLQGTQ IA TLFA+ PPV   VL K F
Sbjct:   24 AGDPDMLQDVCVADLASPVKLNGFPCKANVTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITTANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAF 201          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.383e-67
Identity = 124/167 (74.25%), Postives = 143/167 (85.63%), Query Frame = 1
Query:  184 TAAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLF 678
            +++ADP+MLQD+CVADL S IK+NGFPCK  A  +  DFFS  LAKP  TNNTFG+ VT ANV TIPGLNTLGVSL+RIDYAPGG+NPPHTHPRATE+VFVLEG LDVGF TTAN L+S+S+KKG+ F FP+GLVHFQKNNG+VPASVIA FNSQL GTQ++  TLF
Sbjct:   20 SSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLF 186          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.806e-67
Identity = 122/183 (66.67%), Postives = 150/183 (81.97%), Query Frame = 1
Query:  184 TAAADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTFPDG 732
            + A DP++LQD+CVADLTS +KVNGF CKA  +E DF+   LA    TNNT+GS VT ANV+ +PGLNTLGVS++RIDYAPGG+NPPHTHPRATE+VFVL+G LDVGF TTAN L +K+I  G+ FVFPRGL+HFQKNNG+ PA+VI+ FNSQL GTQ++A+TLFA++P V + VLTK F  G
Sbjct:   23 STAGDPDLLQDICVADLTSAVKVNGFACKAAVTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITTANKLYTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAFQVG 205          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.295e-65
Identity = 124/184 (67.39%), Postives = 145/184 (78.80%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNV-PASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTFPDG 732
            A DP+ LQD+CVAD TS IKVNGF CK  +N +  DFF   + KP   NNT GS VT ANV+ I GLNTLGVSLARIDYAPGG+NPPHTHPRATE++FVLEG+LDVGF TTAN L +K++KKGE FVFPRGL+H+QKNN    PASVI+ FNSQL GTQ+IA TLF +TP + ++VLT TF  G
Sbjct:   21 AYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTFQIG 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.096e-64
Identity = 122/183 (66.67%), Postives = 144/183 (78.69%), Query Frame = 1
Query:  190 AADPEMLQDVCVADLTSPIKVNGFPCKA--NFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTFPDG 732
            A DP+ LQD+CVAD +   K+NGFPCK   N +E DFF   ++KP   N+T GS VT ANV+ IPGLNTL VSLARIDYAPGG+NPPHTHPRATE+V+VLEG+L+VGF TTAN L +K+IK GE FVFPRGLVHFQKNNG  PASV++ FNSQL GT ++A TLFA+ P + E VLTKTF  G
Sbjct:   22 AYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTFQVG 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.351e-61
Identity = 116/183 (63.39%), Postives = 138/183 (75.41%), Query Frame = 1
Query:  190 AADPEMLQDVCVAD---LTSPIKVNGFPCKA--NFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP+MLQDVCVAD   L  P+++NGFPCK   N +  DFF D L K   T N  GS VTAA+V+++PGLNT+GVS+ARIDYAP G+NPPHTHPRATEI+FV+EG LDVGF TTAN L ++++ KGE FVFPRGLVHFQKNNGN PA  IA  NSQL GTQ+IA  LF + PP+    L + F
Sbjct:   22 AGDPDMLQDVCVADYKSLKGPLRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTTANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAF 204          
BLAST of FC875492 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.298e-57
Identity = 112/183 (61.20%), Postives = 135/183 (73.77%), Query Frame = 1
Query:  190 AADPEMLQDVCVAD---LTSPIKVNGFPCKA--NFSEMDFFSDKLAKPVATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTQNIALTLFASTPPVAEYVLTKTF 723
            A DP+MLQDVCVAD   L  P+++NG PCK   N +  DFF D L     T N  GS VTAA+V+ +PGLNT+GVS+ARIDYAP G++PPHTHPRATEI+FV EG LDVGF TTAN L ++++ KGE FVFPRGLVHFQ+N+GN  A  IA FNSQL GTQ+IA TLF + PP+    L + F
Sbjct:   22 AGDPDMLQDVCVADYKSLRGPLRLNGIPCKRLENVTANDFFFDGLTNAGNTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGFVTTANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAF 204          
The following BLAST results are available for this feature:
BLAST of FC875492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
NEC1_NICLS8.372e-7374.72Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]
NEC1_NICPL7.087e-7273.03Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE... [more]
RHRE_PEA3.292e-6972.68Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
GL11_ORYSJ6.209e-6871.35Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
GL21_ARATH1.383e-6774.25Germin-like protein subfamily 2 member 1 OS=Arabid... [more]
GL52_ORYSJ1.806e-6766.67Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL24_ARATH1.295e-6567.39Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL22_ARATH1.096e-6466.67Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
GL13_ORYSJ7.351e-6163.39Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL32_ORYSJ1.298e-5761.20Putative germin-like protein 3-2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC31404E08EF CTVClemen1 Citrus clementina cDNA clone C31404E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875492 ID=FC875492; Name=FC875492; organism=Citrus clementina; type=EST; length=733bp
GGTCAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCTC
TATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATAA
TTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGACA
CTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATCC
CGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAAG
TCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTCA
GACAAATTAGCAAAGCCAGTAGCCACAAACAACACGTTTGGTTCAACAGT
GACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTCT
CACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACACG
CACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACGT
AGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAGG
GTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAAT
GGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGGG
GACTCAGAACATTGCTCTTACATTGTTTGCATCTACGCCGCCAGTGGCGG
AATATGTATTGACTAAGACTTTCCCAGATGGTA
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