FC875515

Overview
NameFC875515
Unique NameFC875515
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC875515 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.239e-41
Identity = 79/132 (59.85%), Postives = 99/132 (75.00%), Query Frame = 1 
Query:  193 ASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXXXXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGAR--LNRNERKRLFSLINDQPTVFEVV 582
            A +PRTVEE+++DF  RRAG+++ALT DV EF+ LCDP+KENLCLYGHPNE W                  GINFARDGM  KDWLSLVAVH+D+WLL+VAF+ GAR   ++ +RKRLF+++ND PT+FEVV
Sbjct:    6 AYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVV 137
The following BLAST results are available for this feature:
BLAST of FC875515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.239e-4159.85PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC31404G08EF CTVClemen1 Citrus clementina cDNA clone C31404G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875515 ID=FC875515; Name=FC875515; organism=Citrus clementina; type=EST; length=709bp
GGACATCTACAATACATGTGCATCTTTCTTCGATACCATCTCGTCTCCTC
GACTCGATCTCCATGGTCTCACCGTACCCTTACTCTAATTCAAATTCCTC
CAGTTCGTCCAATTCGCTCCTCTAATTAAATCCAATTTAATAGAATCTCA
CTTACTAATTAGATCTCCAATATTTGCTTTGCTATGGAAATGGCCTCCAG
CCCCCGCACCGTGGAGGAGATCTACAAAGATTTCTGCGCTCGTAGAGCCG
GCGTCGTTCGCGCTTTAACTAACGATGTCGATGAATTTTACGGACTCTGC
GATCCAGATAAGGAGAATCTGTGCTTGTACGGCCATCCTAATGAGTCGTG
GGAAGTGACGTTGCCGGCAGAGGAAGTTCCGCCGGAGCTTCCTGAGCCGG
CACTTGGGATTAATTTTGCGAGAGATGGGATGAACAGGAAGGACTGGCTG
TCTTTGGTTGCAGTGCACACTGATTCATGGTTGCTTTCAGTGGCTTTTTA
TCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTCTGTTTAGCTTGA
TCAATGATCAACCTACTGTGTTTGAAGTTGTAACAGAAAGGAAGCCTATA
AAAGATAAACCCAGTGTGGATAGTAGCAGCAAATCTCGCGGCAGCACTAA
GAGATNCAATGATGGCCAAGTGAAAAGTAACCCTAAGCTAGCAGATGAGA
GTTTCGATG
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