FC875524

Overview
NameFC875524
Unique NameFC875524
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5082 contig Ccv1_Contig5082:50..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 55/158 (34.81%), Postives = 92/158 (58.23%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILN-RIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F ++A+  H + I +L+ K+ K ++C+G+S +SQ L A+    R    F    +++            +  +Y++ F  RS+YM + D F +  ++VP A+LALLI+    H+     + W F +YLEAV++LPQL ++Q+T   E  TAHY+FAL
Sbjct:    2 NIFRISADMSHLLAIIILLLKIWKSRSCSGISARSQILFALVFTARYLDLFSTYISLYNTTMKITFLAATYATVYLMFFKFRSTYMRESDTFRVELLIVPAAILALLIN----HDFAPFELLWTFSIYLEAVAILPQLFLLQSTGSAEVITAHYLFAL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD2_CAEEL (ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 52/157 (33.12%), Postives = 86/157 (54.78%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXW-VIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            NLF   A+  H+I I VL+ K+ K ++C G+S +SQ L A+    R    F   ++ +            +  +Y++    +++Y  + D+F I ++V+P  +LALLI+      I   + W F +YLEAV+++PQL ++  T   E  TAHY+FAL
Sbjct:    2 NLFRFTADVAHAIAIVVLLLKIWKSRSCEGISGRSQLLFALVFVTRYLDLFTNFFSFYNTAMKIFYLVASFGTVYLMWAKFKATYDRNNDSFRIEFLVIPSMILALLINHEF---IFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFAL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD2_PETHY (ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 52/161 (32.30%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFN--LRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F +A +  H   + VL+ K+   K+CAG+SLK+QEL A+    R   ++  F+  Y  +             +++ +R +  +R SY +D+D F   ++V+PC +LAL+I+   +      + W F +YLEAV++LPQL ++Q T+ ++  T  Y+F L
Sbjct:    2 NIFRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFVTRYLDIFTDFISLY--NTTMKLVFLGSSLSIVWYMRHHKIVRRSYDKDQDTFRHLFLVLPCLLLALVINEKFT---FKEVMWTFSIYLEAVAILPQLVLLQRTRNIDNLTGQYIFLL 157          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD2_CAEBR (ER lumen protein retaining receptor OS=Caenorhabditis briggsae GN=erd-2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 48/157 (30.57%), Postives = 86/157 (54.78%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXX-WVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F + A+  H++ I +L+ K+ K ++C G+S +SQ L A+    R    F   Y+++               +Y++    +++Y  + D F I ++V+P  +LAL+I+      +   + W F +YLEAV+++PQL ++  T   E  TAHY+FAL
Sbjct:    2 NIFRITADLAHAVAIVILLLKIWKSRSCEGISGRSQILFAVTFFTRYLDLFTSFYSLYNTVMKVLFLAGSIGTVYLMWVKFKATYDRNNDTFRIEFLVIPSIILALIINHEF---MFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFAL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD2_ENTHI (ER lumen protein retaining receptor OS=Entamoeba histolytica GN=ERD2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 51/157 (32.48%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXX-WVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            NLF ++A+ VH + I  L+ K++  K C G+SL+SQ L  I    R    F   Y+++             + IY+I    R++Y +  D   ++Y++VPC VLA +    T    +  I W F ++LEAV++LPQ+ ++++T  VE   + Y+F L
Sbjct:    4 NLFRISADLVHLLSIYFLLTKIISHKNCIGISLRSQILFFIVWVTRYLDIFYNFYSLYNTILKIVYLTTSAYTIYLISKRFRATYDKIHDTLNVWYLIVPCIVLAFIF---TEDYSITEICWTFSIFLEAVAILPQILLLRSTGEVENLNSQYIFCL 157          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD2_DICDI (ER lumen protein retaining receptor OS=Dictyostelium discoideum GN=kdelr PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 51/162 (31.48%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILN---RIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            NLF    + +H   + +L++K+  +K+CAG+SLKSQ L  I    R   L+ ++V  Y               + +++I    + +Y +D D F I Y++  CA+L+L+ +  T+  I +    I W F +YLE++++LPQL ++Q T  VE  T++Y+  L
Sbjct:    2 NLFSFLGDMLHLGSMLILLFKIKNDKSCAGVSLKSQILFTIVFTARYLDLFTNYVSLYITFMKITYIAVSY--YTLHLIARKYKFTYDKDHDTFKIVYLIASCAILSLITYDKTTIGIYSTFLEILWTFSIYLESIAILPQLILLQRTGEVEALTSNYIVLL 161          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD2_DROME (ER lumen protein retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 51/159 (32.08%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F  A +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ ++V  Y  +              +Y++    +++Y  + D+F I +++VPCA+L+L+I+   +   +  + W F +YLE+V++LPQL ++  T   E  T+HY+FAL
Sbjct:    2 NIFRFAGDLSHVFAIIILLLKIWKTRSCAGISGKSQILFAVVYLTRYLDLFTTYVSLY--NSVMKVLFLATSGATVYLMYVKFKATYDHNHDSFRIEFLLVPCALLSLVINHEFT---VMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSHYLFAL 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD2_SCHPO (ER lumen protein retaining receptor OS=Schizosaccharomyces pombe GN=erd2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 54/151 (35.76%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  244 EAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYA--IHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            +  H   I +L++++ K KTC+GLSLKS  L  +    R Y +    Y    +            ++ Y++   LR +Y +  D F   Y++  CAVLAL I+P TS+ I N I W F ++LE+V++LPQL ++Q +   E  TAHY+FA+
Sbjct:    9 DMAHLAAIFLLLHRMKKSKTCSGLSLKSHLLFLLVYVTR-YLNLFWRYKSLYYFLMRIVFIASESYICYLMLMTLRPTYDKRLDTFRTEYILGGCAVLAL-IYP-TSYTISN-ILWTFSIWLESVAILPQLFMLQRSGETESLTAHYLFAM 155          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD2_ARATH (ER lumen protein retaining receptor OS=Arabidopsis thaliana GN=ERD2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 55/161 (34.16%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYAIHXXXXXXXXXXXXWVIYMIRFN--LRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            N+F  A +  H I + +L+ K+   K+CAG+SLK+QEL A+    R   L+  +V  Y  +             +++ +R +  +R SY +D D F   YVV+ C VL L+++   +   +  +FWAF +YLEAV++LPQL ++Q +  V+  T  YV  L
Sbjct:    2 NIFRFAGDMSHLISVLILLLKIYATKSCAGISLKTQELYALVFLTRYLDLFTDYVSLY--NSIMKIVFIASSLAIVWCMRRHPLVRRSYDKDLDTFRHQYVVLACFVLGLILNEKFT---VQEVFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVVFL 157          
BLAST of FC875524 vs. ExPASy Swiss-Prot
Match: ERD21_RAT (ER lumen protein retaining receptor 1 OS=Rattus norvegicus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 54/158 (34.18%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  226 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYAIHXXXXXXXXXXXXWV-IYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFAL 690
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R    F    +++            +  ++MI    +++Y  + D F + ++VVP AVLA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FAL
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAVLAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFAL 155          
The following BLAST results are available for this feature:
BLAST of FC875524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ERD22_CAEEL8.778e-2134.81Putative ER lumen protein retaining receptor C28H8... [more]
ERD2_CAEEL4.078e-1833.12ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD2_PETHY1.186e-1732.30ER lumen protein retaining receptor OS=Petunia hyb... [more]
ERD2_CAEBR1.186e-1730.57ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD2_ENTHI2.024e-1732.48ER lumen protein retaining receptor OS=Entamoeba h... [more]
ERD2_DICDI3.452e-1731.48ER lumen protein retaining receptor OS=Dictyosteli... [more]
ERD2_DROME4.508e-1732.08ER lumen protein retaining receptor OS=Drosophila ... [more]
ERD2_SCHPO5.888e-1735.76ER lumen protein retaining receptor OS=Schizosacch... [more]
ERD2_ARATH1.312e-1634.16ER lumen protein retaining receptor OS=Arabidopsis... [more]
ERD21_RAT1.713e-1634.18ER lumen protein retaining receptor 1 OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionC31404H05EF CTVClemen1 Citrus clementina cDNA clone C31404H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875524 ID=FC875524; Name=FC875524; organism=Citrus clementina; type=EST; length=690bp
GAAACTCAATTGTCTCGCTCTCTCTAAATTACATCTCACTCTCTCGCACT
TTCTCTTAATTTCCGGTAAAATATTTTTAGACCGCTCATGAGGGCGCCGA
AGAGGCCGATCCACGCGGTTTCGACATGGGTCCGGCGACAGCCGCCGAAA
GTGAAGGCATTTTTGGCGGTGGTCTCCGGCATGGCAGCGCTGGCTTTGCT
CCGATTCATTGTACACGACCACGATAACCTCTTCGTTGCTGCCGAGGCCG
TGCACTCCATTGGAATCTCCGTGTTAATATACAAGCTCATGAAAGAGAAA
ACTTGTGCTGGACTGTCACTCAAATCCCAGGAACTAACAGCTATTTTCTT
AGCTGTGAGGCTATACTGTAGTTTTGTGATGGAATATGCTATACACACCC
TACTGGATTTAGCTACTTTGGCTACGACCCTTTGGGTTATTTATATGATC
CGTTTCAATCTAAGGTCTAGTTACATGGAGGACAAGGACAACTTTGCAAT
ATATTATGTGGTGGTACCCTGTGCAGTATTGGCTCTGTTAATTCATCCAT
CGACTTCGCATAATATATTGAATAGGATTTTCTGGGCTTTCTGTGTTTAT
CTGGAAGCTGTTTCAGTACTGCCCCAGTTGCGGGTGATGCAGAACACAAA
GATTGTTGAACCATTCACAGCCCATTATGTATTTGCGCTT
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