FC875652

Overview
NameFC875652
Unique NameFC875652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:30..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.069e-55
Identity = 116/205 (56.59%), Postives = 144/205 (70.24%), Query Frame = 1
Query:   64 TPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK----LPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEP-PSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQTLNYALFKP 663
            TPS    IGVNYGA A+NLP P  VA FL T+TTIDRVKLFDANP F+ AFA T I + V++ N  +PALA     L AA+SW+  N+ P+ P T    ++ GNEIL ++D  LI SLLPAMR L  AL A  L+ V+V+TPH LGIL+ S+  PS   FR GY+  +F  +L+FHR T SPFMVNPYPYF ++P+TLNYALF+P
Sbjct:   21 TPSL--HIGVNYGANADNLPSPTSVATFLATKTTIDRVKLFDANPTFISAFAGTPISLAVSLPNSALPALADKATGLDAARSWIRANLSPYVPATNVTLLLAGNEILLSTDTNLILSLLPAMRRLAQALKAEGLTGVRVTTPHYLGILAPSDGIPSNASFRAGYNTKLFPAMLQFHRDTGSPFMVNPYPYFSYRPETLNYALFRP 223          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.658e-40
Identity = 84/199 (42.21%), Postives = 132/199 (66.33%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLP-AAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGF----KPQTLNYALFKP 663
            IGVNYG +A+NLPPP +    L++ T+I +V+L+ A+P  ++A A T + + +   NGD+P+LA  P AA  W+ +N+LP +P +    I +GNEIL ++D  L+  LLPAM+ ++ AL+A +L   ++VST +S+ +L +S+PPS+G F  GY   +   IL+F   T SPF +NPYP+F +    +P+TL + LF+P
Sbjct:   26 IGVNYGQVADNLPPPSETVKLLQS-TSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPSSGSFAAGYQTGL-KGILQFLSDTGSPFAINPYPFFAYQSDPRPETLAFCLFEP 222          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.313e-37
Identity = 90/207 (43.48%), Postives = 124/207 (59.90%), Query Frame = 1
Query:   61 ITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKG-YDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALFKP 663
            I P+   SIGVNYG I +NLP P  V   +K+     +VKL+DANP+ L+AF++T I   + +GN  +  +     A +W+  N+ P  P T    I +GNEILA +D  L  +LLPAM+ + SAL  A LS  + V+T HSL IL +S PPS G F+    D L    ILEFHR+T SPF++N YP+F +K       L++ LF+P
Sbjct:   21 ILPTTTTSIGVNYGQIGDNLPSPTDVIPLIKS-IGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSKMKDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLDSL--TPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVLFQP 224          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 85/199 (42.71%), Postives = 127/199 (63.82%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQ----TLNYALFKP 663
            +G+NYG IANNLP P +VA  L++   I RVKL+DA+P  L +F+++ +   + +GN  +  ++  P  AQ W+   + PH  +T    IV+GNEI  T+D VLI SLLPAM+++ +AL    L   V V++ HSL ILSTS PPS+G F++ + + +   +L+FH Q +SPF++N YP+F +K       L Y LF+P
Sbjct:   29 VGINYGQIANNLPSPARVAVLLRS-LNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPSSGSFKEEFIQYL-QPLLDFHSQIESPFLINAYPFFAYKDSPKEVPLEYVLFQP 225          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.097e-35
Identity = 86/209 (41.15%), Postives = 123/209 (58.85%), Query Frame = 1
Query:   67 PSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSAL-DAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRL-IFARILEFHRQTKSPFMVNPYPYFGF----KPQTLNYALFKPTPAF 675
            P    SIG+NYG +ANNLPPP+ V   LK+     +VKL+DA+P+ LRAFA +   +TV +GN  +  ++    AQ WV  N+  + P T    IV+GNE+L ++   L A+L PAM+++  AL D      + V+T HSL IL  S PPS   FR+  D L     IL+FH +T SP ++N YP+F +    K  +L++ LF+P   F
Sbjct:   21 PLIVSSIGINYGQVANNLPPPKNVIPLLKS-VGATKVKLYDADPQALRAFAGSGFELTVALGNEYLAQMSDPIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRR--DLLGSLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVLFQPNQGF 226          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.372e-33
Identity = 77/194 (39.69%), Postives = 116/194 (59.79%), Query Frame = 1
Query:   76 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQTLNYAL 654
            A  IG+NYG   NNLP P Q  NF+K+      VKL+DA+PE L   + TN+ VT+TV N  I AL+     A  WV  NILP++PQT  R++++GNEIL+ +   +  +L+PAMR + ++L    + +++V TP ++  L +S PPS G FR+     +   +L+F   T S F +N +PYF +    +N +L
Sbjct:   39 ASKIGINYGRRGNNLPSPYQSINFIKS-IKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGIHNIKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSL 231          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 76/201 (37.81%), Postives = 120/201 (59.70%), Query Frame = 1
Query:   76 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALFK 660
            A  IG+ YG  A+NLP P +V+  ++    I  V+++DAN + L+AFA+T I + + V N D+ A A+  +   +W++NNILP++P T    I +G E+    D      +LPAMR + +AL  + L   +++S+ HSL ILS S PPS+  F K +   +   +LEF  + +SPFM++ YPY+ ++  T    L YALF+
Sbjct:   24 ASKIGICYGRNADNLPSPNRVSELIQ-HLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNA-TGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASFSKKHSAFL-KPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALFE 221          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.830e-29
Identity = 80/202 (39.60%), Postives = 120/202 (59.41%), Query Frame = 1
Query:   85 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALFKPTPA 672
            IGVN G    N+P P QV   LK+Q  I+RV+L+DA+   L AFAHT + V ++V N  +  +++  A A +WV  N+  ++P T    I +G+E+L TS     + L+ A++ +++AL  ANL   ++VSTPHS  I+  S PPS   F K +D +I   +L+F + T SP ++N YPYF +        L+YALF+P  A
Sbjct:   23 IGVNIGTEVTNMPSPTQVVALLKSQN-INRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVL-TSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFFNKTWDPVI-VPLLKFLQSTGSPLLLNVYPYFDYVQSNGVIPLDYALFQPLQA 221          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 80/203 (39.41%), Postives = 117/203 (57.64%), Query Frame = 1
Query:   70 SAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLP-AAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGFKPQT----LNYALFK 660
            S A  IGVN G    N+PPP  +   LK+Q  I  V+L+DAN   L+AFA+T+I V V V N +I  + + P AA +WV  N+  + P T    I +G+E+L T   V    L  A+  +  AL A+NL+  V+VS+P S+ I+    PPST  F   ++  ++ ++L+F + T S FM+N YPY+G+        L+YALFK
Sbjct:   21 SNAAFIGVNIGTDLTNMPPPSDIVTLLKSQQ-ITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAYIPSTNITAIAVGSEVLTTIPHV-APILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTFSPSWNTTVY-QLLQFLKNTGSFFMLNAYPYYGYTTANGIFPLDYALFK 220          
BLAST of FC875652 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 78/201 (38.81%), Postives = 114/201 (56.72%), Query Frame = 1
Query:   76 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVNPYPYFGF----KPQTLNYALF 657
            A S+GV YG + NNLPP  QV    K++  I R++L+D N   L+A   +NI V + V N D+  +A  P+ A +WV  N+    P   FRYI +GNE+   T    L   LLPAMR +++A+ +A L ++++VS+   + ++  S PPS G FR    R     I+ F R+  SP +VN YPYF +    +  +L YALF
Sbjct:   30 AQSVGVCYGMLGNNLPPASQVVQLYKSK-NIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRNDV-RSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALF 228          
The following BLAST results are available for this feature:
BLAST of FC875652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E13B_WHEAT1.069e-5556.59Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E137_ARATH1.658e-4042.21Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E1311_ARATH1.313e-3743.48Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1314_ARATH2.477e-3642.71Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E1310_ARATH2.097e-3541.15Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
EA6_ARATH4.372e-3339.69Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E1312_ARATH1.316e-2937.81Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E133_ARATH3.830e-2939.60Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E134_ARATH6.534e-2939.41Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
GUB_NICPL4.235e-2838.81Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC31401C12EF CTVClemen1 Citrus clementina cDNA clone C31401C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875652 ID=FC875652; Name=FC875652; organism=Citrus clementina; type=EST; length=681bp
ACTGTTACTAAACTCTCTCAATTCCTCCTCTTCCTCTTCCTCTCCCTGTC
TTGCAACGCCATCACCCCCTCCGCCGCTGACTCCATCGGAGTCAACTACG
GCGCCATCGCCAACAACCTCCCGCCACCTCAGCAAGTAGCCAATTTCCTC
AAAACCCAAACCACCATAGACCGCGTCAAGCTCTTCGACGCCAACCCCGA
ATTCCTCCGCGCCTTCGCCCACACAAACATCCCCGTCACCGTCACAGTCG
GCAACGGCGACATACCTGCCCTCGCAAAACTCCCCGCCGCCCAGTCCTGG
GTCGCTAACAACATCCTGCCGCATCACCCCCAGACCATCTTCAGATACAT
CGTCCTCGGCAACGAAATCTTGGCCACGTCGGATAAAGTCCTCATCGCTT
CTCTCCTGCCCGCCATGAGAACTCTTAAATCAGCTCTCGATGCTGCCAAT
CTGAGCAGCGTCCAGGTGTCGACACCTCATTCCCTGGGGATTTTATCAAC
CTCTGAGCCGCCGAGTACCGGAAGGTTCCGTAAAGGTTACGATAGGCTTA
TCTTTGCTAGGATTCTCGAGTTCCACAGACAGACTAAATCCCCGTTTATG
GTTAACCCCTACCCGTATTTTGGGTTCAAGCCTCAGACGCTCAACTACGC
CTTGTTTAAACCAACGCCGGCGTTTTTGATC
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