FC875654

Overview
NameFC875654
Unique NameFC875654
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7178 contig Ccv1_Contig7178:371..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875654 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.572e-22
Identity = 63/174 (36.21%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  151 KFLSEPVPPHGDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNG-DDCKNK---KKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPL 657
            +FL   VP + + ++ V + DV I++++ L  R+Y P +        D +N    + +P+I+ FHGG F  S A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S          ++WL    D + R+FL GDSSGGN+VH VA RA ++ +  L
Sbjct:   47 EFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS----------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVL 210          
BLAST of FC875654 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 61/176 (34.66%), Postives = 90/176 (51.14%), Query Frame = 1
Query:  151 KFLSEPVPPHGDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPL 657
            ++L   V  + + +D V + DV I++   L  R+Y P    +       + +K      +P+IL FHGG F  S A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RAG++ +  L
Sbjct:   47 EYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL 212          
BLAST of FC875654 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.607e-19
Identity = 62/180 (34.44%), Postives = 84/180 (46.67%), Query Frame = 1
Query:  151 KFLSEPVPPHGDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGD-----------------DCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGD 639
            ++L   VP +   ++ V++ D  I++  GL VRIY         GD                 D    +  P+I+ FHGG F  S A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D
Sbjct:   47 EYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAA----EGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAAD 213          
BLAST of FC875654 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.430e-17
Identity = 61/182 (33.52%), Postives = 87/182 (47.80%), Query Frame = 1
Query:  109 DGSVDRTWTGPPEVKFLSEPVPPHGDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK-------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARA 633
            DGS +R        +FL   VP +   +D V + D  ++  + L  RIY P  +            K       +P+++ FHGG F  S A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA
Sbjct:   38 DGSFNRDLA-----EFLDRKVPANSFPLDGVFSFD-HVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRA 204          
The following BLAST results are available for this feature:
BLAST of FC875654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH9.572e-2236.21Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH8.959e-2034.66Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ2.607e-1934.44Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH1.430e-1733.52Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31401D02EF CTVClemen1 Citrus clementina cDNA clone C31401D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875654 ID=FC875654; Name=FC875654; organism=Citrus clementina; type=EST; length=665bp
GAAAATCATCCAAAATAATTACCACACCCAACACTCAACTAGGTAGCTAT
GGTGAACGATGGAAGAGCAATAGTGGATGAAGTGTCCGGTTGGCTAAGAG
TCTACAGCGACGGTTCAGTTGATCGAACATGGACCGGACCACCGGAGGTC
AAGTTCTTGTCCGAACCGGTGCCACCCCACGGTGACTTTATTGACAGTGT
CGCCACCCACGACGTAACCATCAACAAAGAATCCGGCCTCCGTGTCCGAA
TTTATTCACCGGAGGAGATCAAGAAACTTAATGGTGATGATTGCAAGAAC
AAGAAGAAGCTACCAATCATCCTTCACTTTCATGGGGGTGGTTTTTGCGT
TAGCCAAGCTGATTGGTACATGTACTATCACGTTTACACGAAGCTTGCAA
AATCTGTCCCGGCTATCTGTGTCTCCGTCTATCTCCGGCGGGCCCCGGAG
CACCGCCTCCCGGCCGCTTTCGACGATGGTTTCGAAGCCCTCCTTTGGCT
CCGGTCACTATCACTGGCTCAGGCTCAGGCTCGGGAGAATAATTGGCTGA
CTGAACATGTGGATTTTCAACGCGTCTTCCTCATTGGAGACAGCTCCGGA
GGGAACGTAGTGCATGAAGTGGCGGCACGTGCAGGTGACGCGGACTTGAG
CCCGTTGCGTGTGGC
back to top