FC875665

Overview
NameFC875665
Unique NameFC875665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2769 contig Ccv1_Contig2769:16..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875665 vs. ExPASy Swiss-Prot
Match: FBK30_ARATH (F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.768e-60
Identity = 114/194 (58.76%), Postives = 145/194 (74.74%), Query Frame = 3
Query:   81 MDLIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLATWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD 662
            M+LIP+LP+++A ECL R SY+QF  I+SVC+ W  E+S  +F   RK +R S++LL ++QARVD +   G  K  ATP YRI+VLE GSG W+ELPPIPG   GLPLFC+L +VG +L+V+GGLD  TW+A  SVFVF+ +++ WR GA MPG RR  FGCASD DRTV VAGGH+E+K AL SAM YDV+ D
Sbjct:    1 MELIPNLPDDVARECLLRSSYQQFPVIASVCRAWNREVSLSQFLHQRKASRHSQELLILSQARVDPA---GSGKIIATPEYRISVLESGSGLWTELPPIPGQTKGLPLFCRLVSVGSDLIVLGGLDPITWQAHDSVFVFSFLTSKWRVGATMPGVRRSFFGCASDSDRTVLVAGGHNEEKCALTSAMVYDVSED 191          
BLAST of FC875665 vs. ExPASy Swiss-Prot
Match: FBK46_ARATH (F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 80/226 (35.40%), Postives = 115/226 (50.88%), Query Frame = 3
Query:   54 TKKK--KFDSVMDLIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQ---------ARVDQ--------SRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFP--DGLPLFCQLSAV--GPELVVIGGLDLATWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD 662
            +KKK   F    +LIP LP+E+ALECL RV ++  + + SVC+ W+S +S   F + R+    +E LL + Q           VD+        S     P+ F TP + ++V       W  +     FP  + +PLFC+   +    ++++IGG D  T + +  V+V       WRRGA M    R  F CAS     VYVAGGHD+ KNAL+SA  YDV +D
Sbjct:    6 SKKKGGDFQQCHELIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSSFIQERRRCGKTELLLCLVQPLTPPIPASKSVDETLMVDEKKSEDESHPRVFCTPRFGLSVYNAAMSTWHRV----AFPEEEQIPLFCECVVLQDAGKILLIGGWDPETLQPTRDVYVLEFAGRKWRRGAPMKES-RSFFACASVSPTKVYVAGGHDDQKNALRSAEVYDVEKD 226          
BLAST of FC875665 vs. ExPASy Swiss-Prot
Match: SKI20_ARATH (F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana GN=SKIP20 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.720e-26
Identity = 81/237 (34.18%), Postives = 114/237 (48.10%), Query Frame = 3
Query:   51 GTKKKKFDSVM-DLIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQ-------------ARVDQSRKSG------------VPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAV--GPELVVIGGLDLATWEASSSVFVFNIISA-----TWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARD 662
            G  KKK   +  DLIP LP E+A+ECL RV ++  ++I SVC+ WK  IS   F + R     +E LL + Q               + Q +K               P+   TP+Y ++V       W  +      P+ +PLFC+  A+    ++++IGG D  T +    VFV +  +       +RRG  M    R  F CAS G   VYVAGGHD+ KNAL+SA  YDV +D
Sbjct:    2 GVSKKKSGEIRGDLIPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKERIGFGKAESLLCLVQPLTSPPSPAMMEGGEMSQKKKEEEEGESQMTQQLLQPRITGTPLYGLSVYNATLDTWHRV----AIPERIPLFCECVAIQDAGKVLLIGGWDPETLQPVRDVFVLDFFAGEGSGRRFRRGRPM-SAARSFFACASVGSTKVYVAGGHDDQKNALRSAEVYDVEKD 233          
BLAST of FC875665 vs. ExPASy Swiss-Prot
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 57/190 (30.00%), Postives = 91/190 (47.89%), Query Frame = 3
Query:   87 LIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDL--ATWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYD 650
            LIP LP+++A +CL+ V   +F ++ SVCK W+  +   EF   R+     E+ L++           G   R+        V++    + S LPP+PG         ++  V  +L+VI G  +   +  AS+ V+ ++    +W R AD+    R  F CA + +  VYV GGH  D  +L SA  YD
Sbjct:   39 LIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNA-----GGKDNRW-------EVMDCLGQKLSSLPPMPG---PAKTGFKVVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVA-RYDFACA-EVNGHVYVVGGHGVDGESLSSAEVYD 211          
The following BLAST results are available for this feature:
BLAST of FC875665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FBK30_ARATH1.768e-6058.76F-box/kelch-repeat protein At1g80440 OS=Arabidopsi... [more]
FBK46_ARATH3.365e-2735.40F-box/kelch-repeat protein At2g44130 OS=Arabidopsi... [more]
SKI20_ARATH3.720e-2634.18F-box/kelch-repeat protein SKIP20 OS=Arabidopsis t... [more]
FBK28_ARATH1.162e-1130.00F-box/kelch-repeat protein At1g67480 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC31401E02EF CTVClemen1 Citrus clementina cDNA clone C31401E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875665 ID=FC875665; Name=FC875665; organism=Citrus clementina; type=EST; length=662bp
ATCTTTATTCACTAAGACCCCTTCGCTTTAAATTTCTTCCTTTTAAAAGG
GGAACAAAAAAAAAAAAATTCGACTCAGTAATGGATCTAATCCCGGATCT
TCCCAACGAAATCGCCCTTGAATGTTTATCTCGGGTTTCCTACAAACAGT
TCGCCACCATTTCGTCCGTTTGCAAAGGCTGGAAGTCCGAGATATCGCGT
CCCGAATTTCGCCGAAGCAGGAAAGACACACGCTGCAGCGAACAGCTTCT
GTTTATGACCCAAGCCCGAGTTGACCAGAGCAGGAAATCGGGCGTTCCAA
AGAGATTCGCTACCCCGGTATACCGGATTACGGTTTTGGAGCTTGGTTCC
GGTGAATGGTCCGAGTTGCCGCCGATTCCCGGATTTCCTGATGGGTTGCC
TCTGTTTTGTCAGCTCTCTGCTGTCGGGCCGGAGCTTGTAGTGATTGGCG
GGCTCGACCTGGCCACGTGGGAGGCATCAAGTTCCGTGTTTGTTTTTAAT
ATCATTTCTGCAACATGGCGCCGTGGGGCCGACATGCCGGGTGGACGGCG
GATGTTGTTCGGATGTGCATCCGACGGCGATCGGACGGTGTACGTCGCTG
GGGGGCACGATGAGGACAAAAACGCTTTGAAGTCAGCAATGGCGTATGAC
GTGGCCAGAGAT
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