FC875670

Overview
NameFC875670
Unique NameFC875670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875670_ssr90 microsatellite FC875670_ssr90:90..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10291 contig Ccv1_Contig10291:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: VTC4_ARATH (Inositol-phosphate phosphatase OS=Arabidopsis thaliana GN=VTC4 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.547e-59
Identity = 106/127 (83.46%), Postives = 117/127 (92.13%), Query Frame = 3
Query:  312 MAQNDSLVKFLDTAVDAAKRAGEIIRNGFYQTKNVEHKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPI 692
            MA NDSL +FL  A+DAAK+AG+IIR GFY+TK+VEHKGQVDLVTETDK CE+L+FNHLKQ FP HKFIGEETTAA G TELTDEPTWIVDPLDGTTNFVHGFPFVC+SIGLTIGK+P+VGVVYNPI
Sbjct:    1 MADNDSLDQFLAAAIDAAKKAGQIIRKGFYETKHVEHKGQVDLVTETDKGCEELVFNHLKQLFPNHKFIGEETTAAFGVTELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIGKVPVVGVVYNPI 127          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: IMP3_SOLLC (Inositol monophosphatase 3 OS=Solanum lycopersicum GN=IMP3 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.651e-58
Identity = 107/127 (84.25%), Postives = 116/127 (91.34%), Query Frame = 3
Query:  312 MAQNDSLVKFLDTAVDAAKRAGEIIRNGFYQTKNVEHKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPI 692
            MAQN S+ +FLD AV+AAK+AGEIIR GFY+TK+VEHKG VDLVTETDKACED IFNHLKQ+FP+HKFIGEETTAACG  ELTDEPTWIVDPLDGTTNFVHGFPFVC+SIGLTI K P VGVVYNPI
Sbjct:    1 MAQNGSVEQFLDVAVEAAKKAGEIIREGFYKTKHVEHKGMVDLVTETDKACEDFIFNHLKQRFPSHKFIGEETTAACGNFELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIEKKPTVGVVYNPI 127          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: IMPP_MESCR (Inositol monophosphatase OS=Mesembryanthemum crystallinum GN=IMP1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.192e-58
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 3
Query:  312 MAQNDSLVKFLDTAVDAAKRAGEIIRNGFYQTKNVEHKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPI 692
            MA N  L  FL TAVDAAKRAGE+IR GFY  KNVEHKGQVDLVTETDK+CED+IFN LKQQ+P HKFIGEETTAA GATELTDEPTWIVDPLDGTTNFVHGFPFVC+SIGLTIGK+P VGVVYNPI
Sbjct:    1 MAANVPLSDFLATAVDAAKRAGEVIRKGFYVKKNVEHKGQVDLVTETDKSCEDIIFNCLKQQYPNHKFIGEETTAAYGATELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIGKVPTVGVVYNPI 127          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: IMP1_SOLLC (Inositol monophosphatase 1 OS=Solanum lycopersicum GN=IMP1 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.871e-56
Identity = 104/127 (81.89%), Postives = 115/127 (90.55%), Query Frame = 3
Query:  312 MAQNDSLVKFLDTAVDAAKRAGEIIRNGFYQTKNVEHKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPI 692
            MA+N SL +FL  AVDAAKRAGEIIR GF++TK+V HKGQVDLVTETDKACEDLIFNHLKQ FP+HKFIGEET+AA G  +LTDEPTWIVDP+DGTTNFVHGFP VC+SIGLTIGKIP VGVVY+PI
Sbjct:    1 MARNGSLEEFLGVAVDAAKRAGEIIRKGFHETKHVVHKGQVDLVTETDKACEDLIFNHLKQHFPSHKFIGEETSAATGDFDLTDEPTWIVDPVDGTTNFVHGFPSVCVSIGLTIGKIPTVGVVYDPI 127          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: IMP2_SOLLC (Inositol monophosphatase 2 OS=Solanum lycopersicum GN=IMP2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.773e-52
Identity = 97/120 (80.83%), Postives = 110/120 (91.67%), Query Frame = 3
Query:  336 KFLDTAVDAAKRAGEIIRNGFYQTKNVEHKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAAC-GATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPI 692
            +F+D A++AAK+AGEIIR+GFY++K++EHKG VDLVTETDKACE LIFNHLKQ FP+HKFIGEETTAA  G  ELTDEPTWIVDPLDGTTNFVHGFPFVC+SIGLTI K P+VGVVYNPI
Sbjct:    3 EFVDVAIEAAKKAGEIIRHGFYKSKHIEHKGVVDLVTETDKACEVLIFNHLKQCFPSHKFIGEETTAAASGNFELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIEKKPVVGVVYNPI 122          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: IMPA1_PIG (Inositol monophosphatase 1 OS=Sus scrofa GN=IMPA1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.570e-27
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  342 LDTAVDAAKRAGEIIRNGFYQTKNVEHKGQ-VDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIWMSFYWSR 716
            +D AV  A++AGEI+R       N+  K    DLVT TD+  E ++ + +K+++P+H FIGEE+ AA   + LTD PTWI+DP+DGTTNFVHGFPFV +SIG  + K    GVVY+ +    Y  R
Sbjct:    9 MDYAVTLARQAGEIVREALKNEMNIMIKSSPADLVTATDEKVEKMLISSIKEKYPSHSFIGEESVAAGEKSVLTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKGMEFGVVYSCMEDKMYTGR 134          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: IMPA1_BOVIN (Inositol monophosphatase 1 OS=Bos taurus GN=IMPA1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.276e-26
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 3
Query:  342 LDTAVDAAKRAGEIIRNGFYQTKNVEHKGQ-VDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIWMSFYWSR 716
            +D AV  A +AGE++R       N+  K    DLVT TD+  E ++   +K+++P+H FIGEE+ AA   + LTD PTWI+DP+DGTTNFVHGFPFV +SIG  + K    G+VY+ +    Y  R
Sbjct:    9 MDYAVTLAGQAGEVVREALKNEMNIMVKSSPADLVTATDQKVEKMLITSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCLEDKMYTGR 134          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: IMPA1_PONAB (Inositol monophosphatase 1 OS=Pongo abelii GN=IMPA1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.712e-26
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  342 LDTAVDAAKRAGEIIRNGFYQTKNVEHKGQ-VDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIWMSFYWSR 716
            +D AV  A++AGE++        NV  K   VDLVT TD+  E ++ + +K+++P+H FIGEE+ AA   + LTD PTWI+DP+DGTTNFVH FPFV +SIG  + K    GVVY+ +    Y +R
Sbjct:    9 MDYAVTLARQAGEVVCEAIKNEMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTAR 134          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: IMPA1_HUMAN (Inositol monophosphatase 1 OS=Homo sapiens GN=IMPA1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.712e-26
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  342 LDTAVDAAKRAGEIIRNGFYQTKNVEHKGQ-VDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIWMSFYWSR 716
            +D AV  A++AGE++        NV  K   VDLVT TD+  E ++ + +K+++P+H FIGEE+ AA   + LTD PTWI+DP+DGTTNFVH FPFV +SIG  + K    GVVY+ +    Y +R
Sbjct:    9 MDYAVTLARQAGEVVCEAIKNEMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTAR 134          
BLAST of FC875670 vs. ExPASy Swiss-Prot
Match: IMPA1_CAEEL (Inositol monophosphatase ttx-7 OS=Caenorhabditis elegans GN=ttx-7 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.712e-26
Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 3
Query:  339 FLDTAVDAAKRAGEIIRNGFY--QTKNVEHKGQVDLVTETDKACEDLIFNHLKQQFPAHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIWMSFY 707
            F+D A++  K+AG ++R  F   ++K        DLVTETD+A E L+   L ++F  H+FIGEE+ A     E TD PTWI+DP+DGTTNFVH  P + I +GL I K    G+VYNPI    Y
Sbjct:   13 FVDYAIELVKKAGTLVRTAFDSPESKVDTKSSNTDLVTETDQAVEKLLIEGLSERFKGHRFIGEESVAGGAKIEWTDAPTWIIDPIDGTTNFVHRIPMIAICVGLAIKKQIRAGIVYNPITNELY 137          
The following BLAST results are available for this feature:
BLAST of FC875670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
VTC4_ARATH2.547e-5983.46Inositol-phosphate phosphatase OS=Arabidopsis thal... [more]
IMP3_SOLLC1.651e-5884.25Inositol monophosphatase 3 OS=Solanum lycopersicum... [more]
IMPP_MESCR8.192e-5885.04Inositol monophosphatase OS=Mesembryanthemum cryst... [more]
IMP1_SOLLC5.871e-5681.89Inositol monophosphatase 1 OS=Solanum lycopersicum... [more]
IMP2_SOLLC8.773e-5280.83Inositol monophosphatase 2 OS=Solanum lycopersicum... [more]
IMPA1_PIG2.570e-2747.62Inositol monophosphatase 1 OS=Sus scrofa GN=IMPA1 ... [more]
IMPA1_BOVIN1.276e-2646.03Inositol monophosphatase 1 OS=Bos taurus GN=IMPA1 ... [more]
IMPA1_PONAB3.712e-2646.83Inositol monophosphatase 1 OS=Pongo abelii GN=IMPA... [more]
IMPA1_HUMAN3.712e-2646.83Inositol monophosphatase 1 OS=Homo sapiens GN=IMPA... [more]
IMPA1_CAEEL3.712e-2646.40Inositol monophosphatase ttx-7 OS=Caenorhabditis e... [more]

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Properties
Property NameValue
Genbank descriptionC31401E07EF CTVClemen1 Citrus clementina cDNA clone C31401E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875670 ID=FC875670; Name=FC875670; organism=Citrus clementina; type=EST; length=764bp
GGTTGTAATTACCTCGATGGGACTCGAGAGAACTCTTCAGTATTCTTCCA
AAGGGTAATTGCGTGACGTGATGAATCTTGTCTATTAAAACACACACACA
AACACCAAGTAAAATCGTGGTGTCGGATTAGATTGGTTTGATGGTTTCAT
TTTGCTACGTATACAAAAAAAAAATCAAATAAAAAGAAAATAGCTCAAAA
ACGAAGCACAACCTGTCATTACCACCATCATCACTCATCAGCTCGCTGTC
CCTTCTCTTCTCGTTCTTCTCTTTAACTTTTTAATCCCGTATAATAAAAA
ATTCTACCCATATGGCACAAAATGATTCGCTTGTAAAGTTCTTGGACACT
GCAGTTGATGCAGCTAAGAGGGCTGGCGAGATAATCCGTAATGGGTTCTA
TCAAACCAAAAATGTGGAGCATAAAGGCCAGGTGGATTTGGTCACAGAAA
CTGATAAAGCATGTGAGGATCTCATATTTAATCATCTCAAGCAGCAATTT
CCCGCGCATAAGTTCATTGGAGAAGAAACTACCGCTGCTTGTGGTGCCAC
AGAGTTGACTGATGAACCCACTTGGATTGTTGATCCTCTTGATGGAACAA
CTAACTTTGTGCATGGGTTTCCCTTTGTGTGTATCTCTATCGGTCTTACA
ATTGGAAAGATTCCTATTGTCGGGGTTGTCTACAATCCAATATGGATGAG
CTTTTACTGGAGTCGTGGACAAGTGCATTTTTATGGAAAACTATAAAGTA
TATCTCAACTGACT
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