FC876183

Overview
NameFC876183
Unique NameFC876183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15147 contig Ccv1_Contig15147:7..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.819e-87
Identity = 141/202 (69.80%), Postives = 163/202 (80.69%), Query Frame = 1
Query:  145 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVIXXXXXXXXXXXXXXAFHVSGRPYDRFACHF 750
            VP++  K ++D  KRVPC KPPF++  +KKAIPPHCF+RS+ RSFSY++ D+ IA  FYY+A  Y   LP PLSYLAWP+YWA QGC+LTG+WV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPKQK+AI WY KYLNNPLGR++              AF+VSGRPYD FACHF
Sbjct:    9 VPTSSKKSETDTTKRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQFVLGWPLYLAFNVSGRPYDGFACHF 210          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.550e-85
Identity = 146/203 (71.92%), Postives = 162/203 (79.80%), Query Frame = 1
Query:  145 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVIXXXXXXXXXXXXXXAFHVSGRPYDRFACHFD 753
            VP    K + DPLKRVP  KP F+LSQ+KKAIPPHCF+RSVLRSFSYVV+DLTIAF  YY+A  Y H LP PLS+    +YWA+QGCILTGVWV+AHECGHHAFSDYQ LDD VGLILHS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPKQK+ I WY+KYLNNP GRV+              A +VSGRPYDRFACH+D
Sbjct:    9 VPPANRKSEVDPLKRVPFEKPQFSLSQIKKAIPPHCFQRSVLRSFSYVVYDLTIAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTLTLGWPLYLALNVSGRPYDRFACHYD 211          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.987e-84
Identity = 139/203 (68.47%), Postives = 162/203 (79.80%), Query Frame = 1
Query:  145 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVIXXXXXXXXXXXXXXAFHVSGRPY-DRFACHF 750
            V  +P K ++D LKRVPC  PPFT+ ++KKAIPPHCF+RS+ RSFSY++ D+ +A  FYY+A TY   LPHPLSY+AWP+YWA QG +LTGVWV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPK+K+ I WY KYLNNPLGR +              AF+VSGRPY + FACHF
Sbjct:    9 VSPSPKKSETDTLKRVPCETPPFTVGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSDIKWYGKYLNNPLGRTVMLTVQFTLGWPLYWAFNVSGRPYPEGFACHF 211          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.561e-80
Identity = 133/191 (69.63%), Postives = 153/191 (80.10%), Query Frame = 1
Query:  178 PLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVIXXXXXXXXXXXXXXAFHVSGRPYDRFACHF 750
            PL RVP +KPPFT+ Q+KKAIPPHCF+RS+L SFSYVV+DL+ AF+FY IA TY H LP P S +AWP+YW LQGC+LTGVWV+AHECGHHAFS YQW+DD VGL LHS LLVPYFSWK SHRRHHSNTGSLDRDEVFVPK K+ + W++KYLNNPLGR +              AF+VSGRPYD FA H+
Sbjct:   25 PLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFY-IATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHY 214          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 4.241e-67
Identity = 112/197 (56.85%), Postives = 140/197 (71.07%), Query Frame = 1
Query:  163 KVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVIXXXXXXXXXXXXXXAFHVSGRPYDRFACHFD 753
            +    PL       PPFT+S +K+AIPPHCF+RSV+RS  Y+VHD  IA++FY++AD YI  LP PL+YLAWP+YW  Q  ILTG+WV+ HECGHHAFSDYQW+DDTVG ILHS L+ PYFSWKYSHR HH+NT SLD DEV++PK K  +  Y K LN+P GR++                ++SG+ Y+RFA HFD
Sbjct:    8 RTSQKPLMERVSVDPPFTVSDLKQAIPPHCFKRSVIRSSYYIVHDAIIAYIFYFLADKYIPILPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITFTLGFPLYLFTNISGKKYERFANHFD 204          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.857e-38
Identity = 72/139 (51.80%), Postives = 99/139 (71.22%), Query Frame = 1
Query:  205 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIG 618
            P FT+ ++++ IP HCFERS LR   +V  DLT A + + +A T I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH  TG + +D+VFVPK ++ +G
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVG 173          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.857e-38
Identity = 72/139 (51.80%), Postives = 99/139 (71.22%), Query Frame = 1
Query:  205 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIG 618
            P FT+ ++++ IP HCFERS LR   +V  DLT A + + +A T I +  +PL  YLAWP YW +QG + TG+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH  TG + +D+VFVPK ++ +G
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVG 173          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.861e-30
Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 1
Query:  193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            P ++PPF +  ++ AIP HC+ +S LRS SYVV D+ IA     IA  Y+       S+  WP+YWA QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N G ++ DE +VP
Sbjct:   28 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDI-IAVAALAIAAVYVD------SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVP 155          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.146e-30
Identity = 63/151 (41.72%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP---KQKTAIGWYAKYL 636
            P + PPF L++++  IP HC+ +  LRS SYVV D+        IA        H  S+L +P+YWA+QG +   ++V+ H+CGH +FSD Q L++ VG ILHS +LVPY  W+ SH+ HH N G+++ DE +VP   K    +G+  K+L
Sbjct:   24 PSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAI-------HLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFL 167          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 1
Query:  193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            P ++PPF +  ++ AIP HC+ +S LRS SYV  D+  A     +A  Y        S+  WP+YW  QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N G ++ DE +VP
Sbjct:   25 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDI-FAVAALAMAAVYFD------SWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVP 152          
The following BLAST results are available for this feature:
BLAST of FC876183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD6E_ARATH4.819e-8769.80Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN1.550e-8571.92Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU4.987e-8468.47Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN2.561e-8069.63Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL4.241e-6756.85Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORIS1.857e-3851.80Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP1.857e-3851.80Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD3E_ARATH1.861e-3045.93Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_TOBAC4.146e-3041.72Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA2.275e-2842.96Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC32001C11EF DevOvary1 Citrus clementina cDNA clone C32001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876183 ID=FC876183; Name=FC876183; organism=Citrus clementina; type=EST; length=755bp
GAACGTTTCAACTCACAACGCGGCCGGCGAAGGCGAGAAAGAGAGAGGGA
GAGAAAGTGAGGTCTCTCATTTTCTTCTTCTTTGCAGTCCAAGTGCTTCG
CTTCTTCAGGTTGACGAACAATGGGTGCAGGTGGACGAATGGCTGTACCT
TCAACGCCCATGAAGGTGGACTCTGATCCCTTGAAGCGAGTTCCATGCTC
AAAGCCACCATTCACACTCAGCCAAGTAAAGAAAGCTATCCCACCTCACT
GTTTTGAGCGGTCTGTTCTCCGTTCATTCTCCTACGTTGTTCATGACCTC
ACCATTGCCTTTGTCTTTTACTACATTGCCGACACTTACATTCACCAACT
TCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTTACTGGGCTCTTCAAG
GCTGCATTTTAACTGGAGTTTGGGTTGTAGCTCATGAATGTGGCCACCAT
GCCTTCAGTGACTATCAATGGCTTGACGACACTGTTGGCCTTATCCTCCA
CTCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGTATAGCCATCGCCGCC
ATCACTCCAATACAGGATCCCTTGATCGTGATGAAGTATTTGTCCCCAAG
CAAAAAACCGCCATTGGTTGGTATGCCAAGTACCTTAACAACCCACTTGG
CCGAGTCATAACACTTACTGTCACCCTCACCCTTGGCTGGNCTTTGTACC
TGGCATTTCATGTATCCGGTAGGCCTTATGATAGATTTGCTTGCCACTTT
GATCC
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