FC876195

Overview
NameFC876195
Unique NameFC876195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10308 contig Ccv1_Contig10308:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876195 vs. ExPASy Swiss-Prot
Match: CYP37_ARATH (Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic OS=Arabidopsis thaliana GN=CYP37 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 2.126e-36
Identity = 68/145 (46.90%), Postives = 89/145 (61.38%), Query Frame = 1 
Query:  145 SSPILPHKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFGHFKIHCKRTNIND-TREPVHQHDLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDTKVPRTGELALRRAIPANANMKAIQVVL 576
            SS ++ H+L F   +   R FL  +   P NR   T  G F++    T+    T+E +H  +      ++TF+ G K ++ L+ATILIFVQ+ +PL L G D   + PA AVLYSPDTKVPRTGELALRRAIPAN +MK IQ  L
Sbjct:    7 SSTVVSHRLFFLHPSPLNRKFLFVKPKLPFNR---TNSGDFRMRLHSTSSKTGTKELIHSCNSSIDSKLNTFEAGSKNLEKLVATILIFVQVWSPLPLFGLDSAYISPAEAVLYSPDTKVPRTGELALRRAIPANPSMKIIQASL 148

HSP 2 Score: 59.3066 bits (142), Expect = 2.126e-36
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 2 
Query:  635 KASLEDISFLLRIPQRKPYGTMEGNVKEALKV 730
            +ASLEDIS+LLRIPQRKPYGTME NVK+ALKV
Sbjct:  145 QASLEDISYLLRIPQRKPYGTMESNVKKALKV 176
The following BLAST results are available for this feature:
BLAST of FC876195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CYP37_ARATH2.126e-3646.90Peptidyl-prolyl cis-trans isomerase CYP37, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC32001E05EF DevOvary1 Citrus clementina cDNA clone C32001E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876195 ID=FC876195; Name=FC876195; organism=Citrus clementina; type=EST; length=741bp
GATGAAACCGAAACCAAAACCATACGAAAACCAATCGAAGACTACCAGAT
AAGCTTTTAGTCGCAAGCAGTGGATTAAACCCGCCAAAATCCCCGCTCTA
TCAGCAAGTACCAACCTTCCTTTCCTTTCATGGCCTTCACTTTATCCTCT
CCCATTCTCCCTCACAAGCTCTCTTTCAGTTTCTCCGCCGCTCCAAAGCG
CTCTTTTCTCTCATCCCAGTTCACATTTCCACTCAACAGGAATGAAGCTA
CAAGATTTGGCCATTTCAAGATTCACTGCAAGCGTACAAACATTAATGAT
ACAAGGGAACCAGTGCACCAGCATGATCTTCCTACCAAATTATTCATATC
AACTTTTCAACATGGAATGAAAACAGTAAAGACTTTGATTGCAACAATTC
TTATTTTTGTCCAAATTTCTACTCCACTATGCTTGGTTGGCTGGGACTTT
TGGTCAGTTTTCCCCGCAAATGCAGTGCTTTATTCTCCTGACACAAAGGT
CCCAAGAACTGGAGAACTTGCTTTGAGAAGGGCTATCCCTGCAAATGCAA
ACATGAAGGCAATACAGGTGGTACTAGTAACATAATTTTTTTCCATTTCT
CTAACTTACTTTGTAATCAGTAGCTTTTTCTTTTAAGGCTTCTTTGGAGG
ATATATCATTTTTGCTAAGGATTCCACAGAGAAAACCTTACGGAACCATG
GAGGGTAATGTGAAAGAAGCACTAAAGGTATTATTTGTCCA
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