FC876200

Overview
NameFC876200
Unique NameFC876200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length362
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:1..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.720e-53
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 2
Query:   44 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 361
            MASHIVGYPRMGPKRELKFALESFWDGKS+AEDL+KVSADLRSSIWKQM+ AGIKYIPSNTFSYYDQVLDTTAMLGAVPPRY W GGEI FDVYFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLKKVSADLRSSIWKQMADAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYGWTGGEIEFDVYFSMARGNASVPA 106          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.493e-51
Identity = 97/106 (91.51%), Postives = 100/106 (94.34%), Query Frame = 2
Query:   44 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 361
            MASHIVGYPRMGPKRELKFALESFWD KSSAEDLQKV+ADLRSSIWKQM+ AGIKYIPSNTFSYYDQVLDT  MLGAVPPRYN+ GGEIGFD YFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVAADLRSSIWKQMADAGIKYIPSNTFSYYDQVLDTATMLGAVPPRYNFAGGEIGFDTYFSMARGNASVPA 106          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.325e-51
Identity = 96/106 (90.57%), Postives = 101/106 (95.28%), Query Frame = 2
Query:   44 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 361
            MASHIVGYPRMGPKRELKFALESFWDGKS+AEDLQKVSADLRSSIWKQMS AG K+IPSNTF++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPA 106          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 6.489e-47
Identity = 92/106 (86.79%), Postives = 94/106 (88.68%), Query Frame = 2
Query:   44 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 361
            MASHIVGYPRMGPKRELKFALESFWDGKSSAEDL+K    L   + KQMS AGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNW GGEIGF  YFSMARGNASVPA
Sbjct:    1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLEKCQLILGIHL-KQMSDAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWTGGEIGFSTYFSMARGNASVPA 105          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_RHILO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhizobium loti GN=metE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.503e-27
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 2
Query:   59 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 346
            +G PR+G +RELKFALES+W GKS A DL   +  LR++ W++    G+  IPSN FS YD VLDT AM+GAVP RY W  GE+  D YF+MARGN
Sbjct:    4 LGVPRIGRRRELKFALESYWSGKSPAADLLATAKALRAASWREQHDRGVSKIPSNDFSLYDHVLDTVAMVGAVPARYTWTDGEVPLDTYFAMARGN 99          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_CAUCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Caulobacter crescentus GN=metE PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.348e-27
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 2
Query:   59 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 361
            +G+PR+GPKRELKFALE++W GK+ A+ L   + DLR+  W + +  G+ ++PSN FS YD VLDT  M+GA+P  Y W+GG +    YF+MARG+   PA
Sbjct:    8 LGFPRIGPKRELKFALEAYWAGKTDADALLDTARDLRAKTWTRQAALGVAHVPSNDFSLYDHVLDTAVMVGAIPAAYGWSGGTVDLATYFAMARGDQGRPA 108          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_RHOPT (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.373e-27
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:   44 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 343
            +A   +G PR+GP+RELK ALESFW GKS+  DL KV+A LR++ W + S  G+  IPSN FS YDQVLDT+ M+GA+P  Y W GG +    YF+MARG
Sbjct:   10 LAVATLGTPRIGPRRELKSALESFWAGKSTEADLLKVAAALRAANWARQSARGVSVIPSNDFSLYDQVLDTSVMVGAIPEIYGWRGGPVSLATYFAMARG 109          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_RHOPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris GN=metE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.373e-27
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:   44 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 343
            +A   +G PR+GP+RELK ALESFW GKS+  DL KV+A LR++ W + S  G+  IPSN FS YDQVLDT+ M+GA+P  Y W GG +    YF+MARG
Sbjct:   10 LAVATLGTPRIGPRRELKSALESFWAGKSTEADLLKVAAALRAANWARQSARGVSVIPSNDFSLYDQVLDTSVMVGAIPEIYGWRGGPVSLATYFAMARG 109          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_PELCD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.465e-24
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   44 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 349
            M +H +G+PRMG  RELK  LES+W G    E L     +LR   W+   QAGI  +P   FSYYD +LD  AMLGAVPPR+ W G  +  D YF MARG++
Sbjct:    1 MLTHTLGFPRMGAHRELKKNLESYWKGAIGQEKLMASGRELRLRHWRLQQQAGIDLVPVGDFSYYDHMLDMVAMLGAVPPRFGWQGESVDLDTYFYMARGSS 102          
BLAST of FC876200 vs. ExPASy Swiss-Prot
Match: METE_ACIF5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metE PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.525e-24
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 2
Query:   53 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSQAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 361
            H +G+PR+G KRELK ALESFW  +   ++LQ  +A LR   W+     G+  +P   FS YD +LD +  LGA+PPRY + GG++G D +F+MARG+A+ PA
Sbjct:    5 HSLGFPRIGHKRELKKALESFWSREIDEQELQSRAAQLRDRHWRIQQTCGMDLVPVGDFSLYDHMLDMSCTLGAIPPRYGFAGGQVGLDTFFAMARGSATQPA 107          
The following BLAST results are available for this feature:
BLAST of FC876200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
METE_MESCR2.720e-5393.405-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO1.493e-5191.515-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ARATH3.325e-5190.575-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SOLSC6.489e-4786.795-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHILO1.503e-2757.295-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CAUCR3.348e-2750.505-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOPT4.373e-2756.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RHOPA4.373e-2756.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PELCD3.465e-2450.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACIF54.525e-2447.575-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001F02EF DevOvary1 Citrus clementina cDNA clone C32001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876200 ID=FC876200; Name=FC876200; organism=Citrus clementina; type=EST; length=362bp
TCTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCAT
CTCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTC
GCGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCTGAGGATTTGCAAAA
GGTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCCAGGCCG
GGATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTC
GACACCACCGCAATGCTCGGTGCCGTGCCCCCGAGGTATAACTGGAACGG
CGGCGAGATTGGATTTGATGTTTACTTCTCCATGGCCAGAGGAAACGCCT
CTGTTCCCGCTA
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