FC876279

Overview
NameFC876279
Unique NameFC876279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length465
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10325 contig Ccv1_Contig10325:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876279 vs. ExPASy Swiss-Prot
Match: ADT1_GOSHI (ADP,ATP carrier protein 1, mitochondrial OS=Gossypium hirsutum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.412e-41
Identity = 91/117 (77.78%), Postives = 97/117 (82.91%), Query Frame = 3
Query:  126 IDQVQHPSVMQKVAGQLLHSSLSQNIQDYE----RPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 464
            +DQVQHPSVMQKVAGQL  SS SQ+ Q Y      P +YQRR AYGNYSNAA Q+P+   A  DLSMVPSTASAICVQAPAEKGF+ FAIDFLMGGVSAAVSKTAAAPIERVKLLIQ
Sbjct:    1 MDQVQHPSVMQKVAGQLFRSSHSQDFQGYNGSFRSPALYQRRAAYGNYSNAALQHPV--RAFGDLSMVPSTASAICVQAPAEKGFSSFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 115          
BLAST of FC876279 vs. ExPASy Swiss-Prot
Match: ADT2_ARATH (ADP,ATP carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=ANT2 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.046e-36
Identity = 77/118 (65.25%), Postives = 94/118 (79.66%), Query Frame = 3
Query:  123 MIDQVQHPSVMQKVAGQLLHSSLSQNIQDY----ERPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 464
            M++Q QHP+++QKV+GQLL SS+SQ+I+ Y    +RP  YQ+  AYGNYSNAAFQYP+V+A     S + +T S + VQAP EKGF  FAIDF+MGGVSAAVSKTAAAPIERVKLLIQ
Sbjct:    1 MVEQTQHPTILQKVSGQLLSSSVSQDIRGYASASKRPATYQKHAAYGNYSNAAFQYPLVAA-----SQIATTTSPVFVQAPGEKGFTNFAIDFMMGGVSAAVSKTAAAPIERVKLLIQ 113          
BLAST of FC876279 vs. ExPASy Swiss-Prot
Match: ADT1_ARATH (ADP,ATP carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=ANT1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 3.368e-35
Identity = 75/115 (65.22%), Postives = 90/115 (78.26%), Query Frame = 3
Query:  123 MIDQVQHPSVMQKVAGQLLHSSLSQNIQ-DYERPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 464
            M+DQVQHP++ QK AGQ + SS+S+++Q  Y+RP+MYQR   YGNYSNAAFQ+P  S       M+ +TAS + VQ P EKGF  FA+DFLMGGVSAAVSKTAAAPIERVKLLIQ
Sbjct:    1 MVDQVQHPTIAQKAAGQFMRSSVSKDVQVGYQRPSMYQRHATYGNYSNAAFQFPPTSR------MLATTASPVFVQTPGEKGFTNFALDFLMGGVSAAVSKTAAAPIERVKLLIQ 109          
BLAST of FC876279 vs. ExPASy Swiss-Prot
Match: ADT1_SOLTU (ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.564e-30
Identity = 76/118 (64.41%), Postives = 84/118 (71.19%), Query Frame = 3
Query:  123 MIDQVQHPSVMQKVAGQL-LHSSLSQNIQDYE---RPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 464
            M D  QHP+V QK A QL L SSLSQ++       +P +YQR  AYGNYSNA  Q      AT DLS++ S AS + VQAP EKGFA FA DFLMGGVSAAVSKTAAAPIERVKLLIQ
Sbjct:    1 MADMNQHPTVFQKAANQLDLRSSLSQDVHARYGGVQPAIYQRHFAYGNYSNAGLQR---GQATQDLSLITSNASPVFVQAPQEKGFAAFATDFLMGGVSAAVSKTAAAPIERVKLLIQ 115          
BLAST of FC876279 vs. ExPASy Swiss-Prot
Match: ADT2_SOLTU (ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.338e-28
Identity = 72/114 (63.16%), Postives = 82/114 (71.93%), Query Frame = 3
Query:  138 QHPSVMQKVAGQL-LHSSLSQNIQ----DYERPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 464
            QHP+V QKVA Q+ L SSLSQ++       +RP + QRR  YGNYSNA  Q      AT DLS++ + AS + VQAP EKG A FA DFLMGGVSAAVSKTAAAPIERVKLLIQ
Sbjct:    4 QHPTVYQKVASQMHLSSSLSQDVHARYGGIQRPALSQRRFPYGNYSNAGLQ---TCQATQDLSLIAANASPVFVQAPQEKGLAAFATDFLMGGVSAAVSKTAAAPIERVKLLIQ 114          
BLAST of FC876279 vs. ExPASy Swiss-Prot
Match: ADT1_MAIZE (ADP,ATP carrier protein 1, mitochondrial OS=Zea mays GN=ANT1 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 4.886e-18
Identity = 56/118 (47.46%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  123 MIDQVQHPSVMQKVAGQL-LHSSLSQNIQDYE---RPTMYQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 464
            M DQ   P+V+ K+ GQ  L S +S+ ++        + Y+RR A  NY   +   P +S +      VP   + +C  APAEKG   F IDF+MGGVSAAVSKTAAAPIERVKLLIQ
Sbjct:    1 MADQANQPTVLHKLGGQFHLRSIISEGVRARNICPSVSSYERRFATRNYMTQSLWGPSMSVSGG--INVPVMQTPLCANAPAEKGGKNFMIDFMMGGVSAAVSKTAAAPIERVKLLIQ 116          
BLAST of FC876279 vs. ExPASy Swiss-Prot
Match: ADT2_MAIZE (ADP,ATP carrier protein 2, mitochondrial OS=Zea mays GN=ANT2 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 9.214e-17
Identity = 57/118 (48.31%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  123 MIDQVQHPSVMQKVAGQL-LHSSLSQNIQDYER-PTM--YQRRGAYGNYSNAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 464
            M DQ   P+V+ K+ GQ  L SS S+ ++     P+   Y+RR A  NY   +   P +S +      VP   + +   APAEKG   F IDF+MGGVSAAVSKTAAAPIERVKLLIQ
Sbjct:    1 MADQANQPTVLHKLGGQFHLSSSFSEGVRARNICPSFSPYERRFATRNYMTQSLWGPSMSVSGG--INVPVMPTPLFANAPAEKGGKNFMIDFMMGGVSAAVSKTAAAPIERVKLLIQ 116          
BLAST of FC876279 vs. ExPASy Swiss-Prot
Match: ADT_ORYSJ (ADP,ATP carrier protein, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0718900 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15
Identity = 56/123 (45.53%), Postives = 67/123 (54.47%), Query Frame = 3
Query:  123 MIDQVQHPSVMQKVAGQL-LHSSLSQNIQDYE---RPTMYQRRGAYGNYS-----NAAFQYPIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 464
            M +Q   P+V+QK  GQ  L SS S+ ++        + Y RR    +Y      N     P++S+            S I   APAEKG   F IDFLMGGVSAAVSKTAAAPIERVKLLIQ
Sbjct:    1 MAEQANQPTVLQKFGGQFHLGSSFSEGVRARNICPSVSSYDRRFTTRSYMTQGLVNGGINVPMMSS------------SPIFANAPAEKGGKNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQ 111          
BLAST of FC876279 vs. ExPASy Swiss-Prot
Match: ADT2_WHEAT (ADP,ATP carrier protein 2, mitochondrial OS=Triticum aestivum GN=ANT-G2 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  306 LSMVPSTASAICVQAPAEK-GFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 464
            +S+   ++S +   AP EK G   FAIDFLMGGVSAAVSKTAAAPIERVKLLIQ
Sbjct:    7 ISVPMMSSSPLFANAPPEKKGVKNFAIDFLMGGVSAAVSKTAAAPIERVKLLIQ 60          
The following BLAST results are available for this feature:
BLAST of FC876279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ADT1_GOSHI1.412e-4177.78ADP,ATP carrier protein 1, mitochondrial OS=Gossyp... [more]
ADT2_ARATH3.046e-3665.25ADP,ATP carrier protein 2, mitochondrial OS=Arabid... [more]
ADT1_ARATH3.368e-3565.22ADP,ATP carrier protein 1, mitochondrial OS=Arabid... [more]
ADT1_SOLTU5.564e-3064.41ADP,ATP carrier protein, mitochondrial OS=Solanum ... [more]
ADT2_SOLTU2.338e-2863.16ADP,ATP carrier protein, mitochondrial (Fragment) ... [more]
ADT1_MAIZE4.886e-1847.46ADP,ATP carrier protein 1, mitochondrial OS=Zea ma... [more]
ADT2_MAIZE9.214e-1748.31ADP,ATP carrier protein 2, mitochondrial OS=Zea ma... [more]
ADT_ORYSJ5.056e-1545.53ADP,ATP carrier protein, mitochondrial OS=Oryza sa... [more]
ADT2_WHEAT9.867e-1168.52ADP,ATP carrier protein 2, mitochondrial OS=Tritic... [more]
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Properties
Property NameValue
Genbank descriptionC32002G11EF DevOvary1 Citrus clementina cDNA clone C32002G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876279 ID=FC876279; Name=FC876279; organism=Citrus clementina; type=EST; length=465bp
GACGCCGGCCTCCAACCACAAAAAAGCAAAATATCTCTGCTTCTCTCGCT
TTTCGCACGCCATTCCTATCTAAGCAGAGCGGGAGGCGGGCACCAATCTG
TCATTTTTAAGGAAAAGTCACAATGATTGATCAGGTTCAACATCCTTCCG
TCATGCAGAAGGTAGCTGGACAGCTCCTTCATTCCAGCCTTTCCCAAAAT
ATTCAGGATTATGAAAGGCCAACCATGTACCAAAGACGTGGTGCTTATGG
GAACTACTCCAATGCTGCATTCCAATACCCCATAGTCAGTGCAGCTACTA
CCGATCTATCTATGGTGCCGTCAACTGCATCTGCTATTTGCGTCCAAGCC
CCAGCTGAGAAAGGCTTTGCAGGCTTTGCTATCGATTTCCTTATGGGTGG
AGTTTCTGCTGCTGTGTCCAAAACAGCTGCTGCTCCCATTGAGCGTGTTA
AGCTTTTGATTCAAA
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