FC876292

Overview
NameFC876292
Unique NameFC876292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:7..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  405 SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 653
            ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAKVNFP+E
Sbjct:  104 AYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEE 186          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 53/88 (60.23%), Postives = 58/88 (65.91%), Query Frame = 3
Query:  441 AKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPRAQ*KATLRNP 704
            A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAKVNFP+    A  R     T + P
Sbjct:  108 AAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPEAPTTAQKRRAGSTTAKAP 195          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 52/89 (58.43%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  441 AKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDET-PAAAPRAQ*KATLRNP 704
            A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAKVNFP+E   A + +   KA L+ P
Sbjct:  113 AEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKP 201          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 48/77 (62.34%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  420 AVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK+NFPD
Sbjct:   60 AVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPD 136          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  444 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK+NFP+
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 3
Query:  456 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDET 656
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK+NFP+E+
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNES 84          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 3
Query:  459 RKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 671
            R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK+NFP++     P
Sbjct:   71 REKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPP 141          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 43/89 (48.31%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  384 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+NFP
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 43/80 (53.75%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  411 GSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            GS   K  E +  S ER +K  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               RG KAK+NFP+
Sbjct:   42 GSAVTKECESSM-SLERPKK--YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPE 118          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 37/68 (54.41%), Postives = 42/68 (61.76%), Query Frame = 3
Query:  465 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAA 668
            RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+    A+
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLAS 155          
The following BLAST results are available for this feature:
BLAST of FC876292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RAP22_ARATH5.733e-2361.45Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF1_ORYSJ5.733e-2360.23Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RA212_ARATH4.854e-2258.43Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP23_ARATH1.195e-2062.34Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH5.023e-1962.32Ethylene-responsive transcription factor ERF071 OS... [more]
ERF73_ARATH2.110e-1758.21Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH3.980e-1652.11Ethylene-responsive transcription factor ERF110 OS... [more]
EF109_ARATH3.980e-1648.31Ethylene-responsive transcription factor ERF109 OS... [more]
RAP26_ARATH8.866e-1653.75Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF115_ARATH1.512e-1554.41Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionC32003A05EF DevOvary1 Citrus clementina cDNA clone C32003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876292 ID=FC876292; Name=FC876292; organism=Citrus clementina; type=EST; length=709bp
GATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCAACAAAA
GCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGT
GCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGGAGGTGC
TATCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGC
TGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAG
TACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCAAGGATT
CAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACGTTGATG
CCGACTTGATGATGGCTGATATTAAGCCTTTTCACTTTCTCAGCTGGTCG
CAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAAAAAAT
CCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGCGTCCA
TGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTTCGTGT
CTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTATGATG
CCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTTAACTTTCCAGAT
GAAACTCCTGCTGCTGCTCCAAGAGCTCAGTGAAAGGCAACTCTCAGAAA
TCCGTTCCC
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