FC876336

Overview
NameFC876336
Unique NameFC876336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876336_ssr389 microsatellite FC876336_ssr389:389..406. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876336_ssr451 microsatellite FC876336_ssr451:451..466. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876336 vs. ExPASy Swiss-Prot
Match: NPS13_ARATH (Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:  574 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKD 684
            MA++L MSPQLEQIHGEIRD+FRAL+NGFQ+LDKIKD
Sbjct:    1 MASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKD 37
The following BLAST results are available for this feature:
BLAST of FC876336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NPS13_ARATH8.094e-1183.78Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NP... [more]
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Properties
Property NameValue
Genbank descriptionC32003E08EF DevOvary1 Citrus clementina cDNA clone C32003E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876336 ID=FC876336; Name=FC876336; organism=Citrus clementina; type=EST; length=684bp
GGTCTTTGTCTTTAATCTGCTTGCCTAGTAGTGCCTACTCAGTATACGAT
ATCTCGCGCTTGTTAAAACGACCGCATCAATATCGCGGTATAAACCAACC
AAAACCGGGTTGATTTTCATTTTTGAGCTTTTCTATTTCCCTGTAATTTC
ATTTTTTTCCTTTTTTTAATTGCCTCCCATCCCAATTAAAAATTACTTAA
TTAATAAATCGCTTTATCAACAAGAAATAATTTATTACCTGACATCGATT
CTCTCTCTTTCTCTTCAAAACACGCGTCCGCTATTTTAAATTTTTTTTAA
TTTTTATTTTCCAAAATTCCTGAAGTTCTCTCGGCATCAGCCCAAAATTT
CCCCCTTTTTGCTATATTTCAATGGTATTGATATCTACATTATTATTATT
ATTATTTGTTTTTTATTAAAAGGAAAGAGGAGTACTGTTCGGTGAGGGTT
TTAATTAATTAATTAATTTTTTAAATTTCCTAAAAACTCCCAGCAACTGA
GGGATCGAAGCAATTTGAATGCCGTGGTGATAATTTAGTTGCCGGAGATT
TTGATTGATTTTCCGGCGTAATTATGGCGACCGATTTGCAGATGAGCCCT
CAGTTGGAGCAGATCCACGGCGAAATTCGCGATAATTTTCGAGCTCTCTC
AAATGGCTTCCAGAAGCTGGATAAGATCAAAGAT
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