FC876341

Overview
NameFC876341
Unique NameFC876341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15285 contig Ccv1_Contig15285:259..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876341 vs. ExPASy Swiss-Prot
Match: PSY_CUCME (Phytoene synthase, chloroplastic OS=Cucumis melo GN=PSY PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.401e-36
Identity = 89/181 (49.17%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  138 MSVTLLWVVSPNSQLS-NCFGFVDSVREENRLFYSSRFLYQHQTRTAVFNSRPKQFNNSNKQRRNSYPLDTDLRHPC--SSGIDLPEISCMVASTAGEVAMSSEEMVYNVVLKQAALVNKQPSGVTRDLDVNPDIALPGTLSLLSEAYDRCGEACAEYAKTFYLRTLLMTSERRRAIWPIY 671
            MS+    VVS N +LS + FGF+DSVR+  ++  S RF  +++    +          + KQ+  ++   T+L++P    SG     ++ MVA+ AGE+A+S+E+ VYNVV+KQAALV +Q      +LDV PDI LPGTLSLL+EAYDRCGE CAEYAKTFYL T+LMT ER++AIW IY
Sbjct:    1 MSLASSLVVSSNVELSPSSFGFLDSVRDGPQIPDSFRFSSRNRVPNLI----------NKKQKWGNHSHSTELKYPILHESGYGSVIVASMVANPAGEIAVSAEQKVYNVVMKQAALVKRQLR-TAGELDVKPDIVLPGTLSLLNEAYDRCGEVCAEYAKTFYLGTMLMTPERQKAIWAIY 170          
BLAST of FC876341 vs. ExPASy Swiss-Prot
Match: PSY_CAPAN (Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.830e-36
Identity = 95/178 (53.37%), Postives = 110/178 (61.80%), Query Frame = 3
Query:  138 MSVTLLWVVSPNSQLSNCFGFVDSVREENRLFYSSRFLYQHQTRTAVFNSRPKQFNNSNKQRRNSYPLDTDLRHPCSSGIDLPEISCMVASTAGEVAMSSEEMVYNVVLKQAALVNKQPSGVTRDLDVNPDIALPGTLSLLSEAYDRCGEACAEYAKTFYLRTLLMTSERRRAIWPIY 671
            MSV LLWVVSP   +SN  GF+ SVRE NR+F SS        R    N R K+     +    SY           SG      S +VA+ AGE+ MSSE MVY+VVL+QAALV +Q    T +LDV  DI +PGTL LLSEAYDRC E CAEYAKTFYL T+LMT ERR+AIW IY
Sbjct:    1 MSVALLWVVSP-CDVSNGTGFLVSVREGNRIFDSSG------RRNLACNERIKRGGGKQRWSFGSYLGGAQT----GSGRKFSVRSAIVATPAGEMTMSSERMVYDVVLRQAALVKRQLRS-TDELDVKKDIPIPGTLGLLSEAYDRCSEVCAEYAKTFYLGTMLMTPERRKAIWAIY 166          
BLAST of FC876341 vs. ExPASy Swiss-Prot
Match: PSY1_SOLLC (Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.689e-35
Identity = 92/178 (51.69%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  138 MSVTLLWVVSPNSQLSNCFGFVDSVREENRLFYSSRFLYQHQTRTAVFNSRPKQFNNSNKQRRNSYPLDTDLRHPCSSGIDLPEISCMVASTAGEVAMSSEEMVYNVVLKQAALVNKQPSGVTRDLDVNPDIALPGTLSLLSEAYDRCGEACAEYAKTFYLRTLLMTSERRRAIWPIY 671
            MSV LLWVVSP   +SN   F++SVRE NR F SSR       R  V N R  +     KQ  N              G      S ++A+ +GE  M+SE+MVY+VVL+QAALV +Q    T +L+V PDI +PG L LLSEAYDRCGE CAEYAKTF L T+LMT ERRRAIW IY
Sbjct:    1 MSVALLWVVSP-CDVSNGTSFMESVREGNRFFDSSRH------RNLVSNERINR--GGGKQTNN--------------GRKFSVRSAILATPSGERTMTSEQMVYDVVLRQAALVKRQLRS-TNELEVKPDIPIPGNLGLLSEAYDRCGEVCAEYAKTFNLGTMLMTPERRRAIWAIY 154          
BLAST of FC876341 vs. ExPASy Swiss-Prot
Match: PSY_ARATH (Phytoene synthase, chloroplastic OS=Arabidopsis thaliana GN=PSY1 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.039e-31
Identity = 91/185 (49.19%), Postives = 109/185 (58.92%), Query Frame = 3
Query:  135 SMSVTLLWVVSPN---SQLSNCFGFVDSVREENRLFYSSRFLYQHQTRTAVFNSRPKQFNNSNKQRRNSYPL-DTDLRHPCSSGIDLPEISCMVASTAGEVAMSSEEMVYNVVLKQAALVNKQPSGVTRDLDVNP--DIALPGTLSLLSEAYDRCGEACAEYAKTFYLRTLLMTSERRRAIWPIY 671
            S SV +LWV + +     ++NC G V  V E +RLF                   P Q    NK ++   P   +      S  I +   S +VAS +GE+A+SSEE VYNVVLKQAALVNKQ    + DLDV    D+ LPG+LSLL EAYDRCGE CAEYAKTFYL TLLMT ERR+AIW IY
Sbjct:    2 SSSVAVLWVATSSLNPDPMNNC-GLV-RVLESSRLF------------------SPCQNQRLNKGKKKQIPTWSSSFVRNRSRRIGVVS-SSLVASPSGEIALSSEEKVYNVVLKQAALVNKQLRSSSYDLDVKKPQDVVLPGSLSLLGEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIY 165          
BLAST of FC876341 vs. ExPASy Swiss-Prot
Match: PSY_NARPS (Phytoene synthase, chloroplastic OS=Narcissus pseudonarcissus GN=PSY PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 76/136 (55.88%), Postives = 89/136 (65.44%), Query Frame = 3
Query:  285 SRPKQFNNSNKQRRNS-YPLDTDLRHPC------SSGIDLPEISCMVASTAGEVAMSSEEMVYNVVLKQAALVNKQPSGVTRDLDVNPDIALPGTLSLLSEAYDRCGEACAEYAKTFYLRTLLMTSERRRAIWPIY 671
            S PK  N   K+ R S Y L T  ++ C      ++G  L   S +VA+ AGE  +SSE+ VY+VVLKQAALV  Q     +  DV PDI LPGT+ LL +AYDRCGE CAEYAKTFYL TLLMT ERRRAIW IY
Sbjct:   28 SSPKYDNLGRKKSRLSVYSLYTTSKYACVGFEAENNGKFLIR-SSLVANPAGEATISSEQKVYDVVLKQAALVKDQTKSSRKSTDVKPDIVLPGTVYLLKDAYDRCGEVCAEYAKTFYLGTLLMTPERRRAIWAIY 162          
BLAST of FC876341 vs. ExPASy Swiss-Prot
Match: PSY_MAIZE (Phytoene synthase, chloroplastic OS=Zea mays GN=Y1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 59/107 (55.14%), Postives = 72/107 (67.29%), Query Frame = 3
Query:  357 HPCSSGIDLPEI-SCMVASTAGEVAMSSEEMVYNVVLKQAALVNKQPSGVTRDLDVNP-DIALPGTLSLLSEAYDRCGEACAEYAKTFYLRTLLMTSERRRAIWPIY 671
            HP  +G   P + S +  + AGE  +SSE+ VY+VVLKQAAL+ +Q    T  LD  P D+ +P   + L EAYDRCGE C EYAKTFYL T+LMT ERRRAIW IY
Sbjct:   50 HPWEAGRPSPAVYSSLPVNPAGEAVVSSEQKVYDVVLKQAALLKRQLR--TPVLDARPQDMDMPR--NGLKEAYDRCGEICEEYAKTFYLGTMLMTEERRRAIWAIY 152          
BLAST of FC876341 vs. ExPASy Swiss-Prot
Match: PSY_DAUCA (Phytoene synthase, chloroplastic OS=Daucus carota GN=PSY PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.009e-18
Identity = 54/108 (50.00%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  387 EISCMVASTAGEVAMSSEEMVYNVVLKQAALVN-------------KQPSGVTRDLDVNPDIALPGTLSLLSEAYDRCGEACAEYAKTFYLRTLLMTSERRRAIWPIY 671
            ++S  V++ A     +SEE VY VVLKQAALV              K+    + D   N D  +  + +LL+EAYDRCGE CAEYAKTFYL TLLMT ERRRA+W IY
Sbjct:   38 KLSTGVSAVAANPVRTSEERVYEVVLKQAALVREEKRSSRGLCLDTKRTGSKSFDKSENDDAGMK-SWNLLNEAYDRCGEVCAEYAKTFYLGTLLMTPERRRAVWAIY 144          
BLAST of FC876341 vs. ExPASy Swiss-Prot
Match: PSY2_SOLLC (Phytoene synthase 2, chloroplastic (Fragment) OS=Solanum lycopersicum GN=PSY2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:  522 NPDIALPGTLSLLSEAYDRCGEACAEYAKTFYLRTLLMTSERRRAIWPIY 671
            +PDI LPG L LLSEAYDRCGE CAEYAKTFYL T+LMT +RRRAIW IY
Sbjct:    1 DPDIVLPGNLGLLSEAYDRCGEVCAEYAKTFYLGTMLMTPDRRRAIWAIY 50          
The following BLAST results are available for this feature:
BLAST of FC876341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSY_CUCME1.401e-3649.17Phytoene synthase, chloroplastic OS=Cucumis melo G... [more]
PSY_CAPAN1.830e-3653.37Phytoene synthase, chloroplastic OS=Capsicum annuu... [more]
PSY1_SOLLC7.689e-3551.69Phytoene synthase 1, chloroplastic OS=Solanum lyco... [more]
PSY_ARATH1.039e-3149.19Phytoene synthase, chloroplastic OS=Arabidopsis th... [more]
PSY_NARPS7.447e-3055.88Phytoene synthase, chloroplastic OS=Narcissus pseu... [more]
PSY_MAIZE4.838e-2155.14Phytoene synthase, chloroplastic OS=Zea mays GN=Y1... [more]
PSY_DAUCA1.009e-1850.00Phytoene synthase, chloroplastic OS=Daucus carota ... [more]
PSY2_SOLLC3.245e-1780.00Phytoene synthase 2, chloroplastic (Fragment) OS=S... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32003F05EF DevOvary1 Citrus clementina cDNA clone C32003F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876341 ID=FC876341; Name=FC876341; organism=Citrus clementina; type=EST; length=672bp
GAGGGAAAGGCTGTGAGGAGTCTGGAAGAGTGGAGACCGGAGAGGTTGTT
GGTCAGGTACAGGATTCAGCTACAGAGAGTTGAAGTTACAGGGGCCTCAA
AATTTTCTTTTTATCCAAAAAAAATAATTTTTACAGCATGTCTGTTACAT
TGCTGTGGGTTGTATCACCTAACTCACAATTGTCCAATTGCTTCGGGTTC
GTCGATTCAGTTCGAGAGGAAAACAGGCTGTTTTATTCATCAAGATTTCT
TTACCAACATCAAACCCGGACTGCTGTGTTTAATTCTAGACCTAAGCAGT
TTAATAATAGTAATAAGCAGAGACGGAATTCTTATCCTTTAGATACAGAT
TTGAGGCATCCTTGCTCATCTGGAATCGACTTGCCTGAAATATCATGTAT
GGTTGCTAGCACTGCTGGAGAAGTGGCCATGTCTTCAGAAGAAATGGTTT
ACAATGTTGTGCTCAAGCAGGCAGCCTTGGTTAATAAGCAACCAAGTGGG
GTTACTCGTGATCTTGATGTGAACCCAGATATTGCTTTACCCGGAACTTT
AAGTCTGCTCAGTGAAGCTTATGATCGTTGTGGAGAAGCTTGCGCCGAGT
ATGCTAAGACATTTTACTTGCGAACTTTGCTGATGACCTCTGAAAGGCGA
AGGGCTATATGGCCTATATATG
back to top