FC876343

Overview
NameFC876343
Unique NameFC876343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9469 contig Ccv1_Contig9469:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876343 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.303e-23
Identity = 65/215 (30.23%), Postives = 109/215 (50.70%), Query Frame = 3
Query:   30 SKTIS*KMASHLGICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQRSSLN------QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQ 656
            S  +S K  S +    PC    +  FP  R  P L  R+   +     DN+ +   + R + +      + +P++ +  +S  G+ D +   R+++QM++TM+RI ED     +T P +      G    R PW I++ E++ ++R D+PG+S+ DVKV VE+ +LVIK++  + N           E+ W    Y  Y TR+ LPDN E EK++
Sbjct:   12 SPILSQKPGSSVKSTPPC----MASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFED----AITIPGRN----IGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGG---------EDCWSRKSYSCYDTRLKLPDNCEKEKVK 205          

HSP 2 Score: 28.4906 bits (62), Expect = 5.303e-23
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 2
Query:  656 AEVKDGVLYITIP 694
            AE+KDGVLYITIP
Sbjct:  206 AELKDGVLYITIP 218          
BLAST of FC876343 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.169e-22
Identity = 66/205 (32.20%), Postives = 104/205 (50.73%), Query Frame = 3
Query:   69 ICTPCASEIITGFPSYRSPPLLRNRDFCGRIKAVADNRGSLDHLQR--------SSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWP-SQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQ 656
            +C+P A        S     +   R    RI+A      S+D +Q+        SS+ +   ++    VS  G+ D     RT++QM++TM+R+ ED      T P S + R  SG    R PW I+E E++ K+R D+PG+S+ DVK+ VE+++LVIK E+ +           + ++ W      SY TR+ LPDN E +KI+
Sbjct:   12 LCSPLAPSPSVSSKSATPFSVSFPRKIPSRIRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFED------TMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKE----------DSDDSWSGRSVSSYGTRLQLPDNCEKDKIK 200          

HSP 2 Score: 25.0238 bits (53), Expect = 1.169e-22
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 2
Query:  656 AEVKDGVLYITIP 694
            AE+K+GVL+ITIP
Sbjct:  201 AELKNGVLFITIP 213          
BLAST of FC876343 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.977e-22
Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = 3
Query:  162 KAVADNRGSLDHLQRSSLN---------QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQ 656
            +A  DN+ +   +  SS           + +P + A  VS  G+ D     RT++QM++TM+R+ ED     +T+P +     SG    RTPW I + EN+ K+R D+PG+S+ DVKV VE  MLVIK E  +  +         ++  W  N Y SY TR++LPDNV  +KI+
Sbjct:   49 RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDT----MTFPGRNRA--SGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDG-------RDKHSWGRN-YSSYDTRLSLPDNVVKDKIK 208          

HSP 2 Score: 23.483 bits (49), Expect = 1.977e-22
Identity = 9/13 (69.23%), Postives = 13/13 (100.00%), Query Frame = 2
Query:  656 AEVKDGVLYITIP 694
            AE+K+GVL+I+IP
Sbjct:  209 AELKNGVLFISIP 221          
BLAST of FC876343 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.345e-22
Identity = 63/173 (36.42%), Postives = 101/173 (58.38%), Query Frame = 3
Query:  138 NRDFCGRIKAVADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQ 656
            N+D    +    +N+G  +   + S  + +P++ A  VS  G+ D     RT++QMM+TM+R+ ED     +T+P  + R   G    R PW I++ EN+ K+R D+PG+S+ +VKV VE+ +LVIK E  ++ E+  D S       W  N Y SY TR++LPDNV+ +K++
Sbjct:   61 NKDTSVDVHVSNNNQGGNN---QGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDT----MTFPGSRNR---GTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEH-KKEESGKDDS-------WGRN-YSSYDTRLSLPDNVDKDKVK 214          

HSP 2 Score: 21.9422 bits (45), Expect = 3.345e-22
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  656 AEVKDGVLYITIP 694
            AE+K+GVL I+IP
Sbjct:  215 AELKNGVLLISIP 227          
BLAST of FC876343 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.435e-22
Identity = 55/164 (33.54%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  174 DNRGSLDHLQRSSLN---QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQ 656
            DN   + H+ +       + +P++ A  +S  GI D +   R+++Q+++TM+R+ ED     +T+P +      G    R PW I++ E++ ++R D+PG+++ DVKV VE+ MLVIK       E   D S       W S  Y SY TR+ LPDN E +K++
Sbjct:    6 DNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDT----MTFPGRN----IGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-------WSSRTYSSYDTRLKLPDNCEKDKVK 154          

HSP 2 Score: 26.5646 bits (57), Expect = 7.435e-22
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 2
Query:  656 AEVKDGVLYITIP 694
            AE+K+GVLYITIP
Sbjct:  155 AELKNGVLYITIP 167          
BLAST of FC876343 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 53/163 (32.52%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  171 ADNRGSLDHLQRSSLNQSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAE-KAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQ 656
            A N G+    Q+ +  Q +P++    +S  G+ D     RT++QM++TM+R+ +D     V +P++  R  +   R R PW I E E + K+R D+PG+SR +V+V VE+  LVI+ E K +  E   +G     +  W      SY  R+ALPD  +  +++
Sbjct:   63 AQNAGN----QQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDD----AVGFPTR--RSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGG----DGWWKERSVSSYDMRLALPDECDKSQVR 211          
BLAST of FC876343 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.313e-16
Identity = 49/155 (31.61%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  201 QRSSLNQSQPKKRAA--PVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQER-VRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQ 656
            Q+ +  Q +P++ +A   +S  G+ D     RT++QM++TM+RI +D     + +P+   R + +G    R PW + E + + ++R D+PG+SR +VKV VE+  LVI+ E  +      +GS    +  W      SY  R+ALPD  +  K++
Sbjct:   67 QQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDD---VALGFPATPRRSLATG--EVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGS---GDGWWKERSVSSYDMRLALPDECDKSKVR 213          

HSP 2 Score: 22.7126 bits (47), Expect = 6.313e-16
Identity = 8/13 (61.54%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  656 AEVKDGVLYITIP 694
            AE+K+GVL +T+P
Sbjct:  214 AELKNGVLLVTVP 226          
BLAST of FC876343 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.589e-12
Identity = 46/145 (31.72%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  231 KKRAAPVSSPG---------IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV 638
            +   AP+S  G         ++D F A R+V Q+M  M+++ME+PF             R   R  R  W +RE E   ++++D+PG+++ DVKV VE++ L+IK+E  +  E        EEE+         YS+RI L  N+
Sbjct:   47 RSNRAPISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPF---------MAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETE--------EEEQR------RRYSSRIELTPNL 168          

HSP 2 Score: 22.3274 bits (46), Expect = 3.589e-12
Identity = 8/13 (61.54%), Postives = 12/13 (92.31%), Query Frame = 2
Query:  656 AEVKDGVLYITIP 694
            AE+K+GVL +T+P
Sbjct:  176 AEMKNGVLKVTVP 188          
BLAST of FC876343 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 3
Query:  219 QSQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV 638
            +S P++R    S   ++D F   R+V Q++  M++ ME+P        + +    SG RRG   W I+E ++   +R+D+PG+SR DVK+ +E+  LVI+ E          G   E+  E   +G   +++RI LPD +
Sbjct:   55 RSVPRRRGDFFSD--VFDPFSPTRSVSQVLNLMDQFMENPLL-----SATRGMGASGARRG---WDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGE----------GKNEEDGGEEGESGNRRFTSRIGLPDKI 174          
The following BLAST results are available for this feature:
BLAST of FC876343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HS21C_PEA5.303e-2330.23Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH1.169e-2232.2025.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_SOLLC1.977e-2236.21Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_PETHY3.345e-2236.42Small heat shock protein, chloroplastic OS=Petunia... [more]
HS22C_SOYBN7.435e-2233.54Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_WHEAT7.690e-1732.52Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ6.313e-1631.6126.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23C_CHERU3.589e-1231.72Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS23M_ARATH4.828e-1131.4323.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC32003F08EF DevOvary1 Citrus clementina cDNA clone C32003F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876343 ID=FC876343; Name=FC876343; organism=Citrus clementina; type=EST; length=694bp
GGCTTCTCAGTATTGGTGACATCTCTCAATCAAAAACTATATCTTAGAAA
ATGGCATCTCATCTTGGTATCTGTACTCCCTGTGCGTCCGAAATAATCAC
CGGTTTTCCCAGCTACAGGTCTCCACCTTTGTTGAGAAATAGAGACTTTT
GTGGCAGGATAAAGGCCGTGGCAGATAACAGAGGCAGCCTTGATCACTTG
CAAAGATCGTCGCTGAATCAATCCCAGCCAAAAAAGAGAGCGGCCCCAGT
TTCATCTCCAGGGATATGGGATAGTTTTCCTGCTGCGAGGACGGTGCAAC
AGATGATGGAAACCATGGAAAGAATAATGGAGGATCCTTTTGCTTACGGA
GTCACTTGGCCTTCACAACAAGAAAGGGTGAGAAGTGGATACAGACGGGG
AAGAACGCCTTGGGCCATCAGGGAAACGGAAAACGACTACAAGATTAGGT
TAGACGTGCCTGGCATGAGCAGGAATGATGTTAAGGTACGGGTTGAAGAG
AGCATGCTCGTAATCAAGGCAGAAAAGGCTCAAAGGAACGAAGCAAACAC
TGATGGAAGTACAGTTGAGGAAGAAGAAGAGTGGCCAAGCAATGGTTACG
GAAGCTACAGCACTAGAATTGCATTGCCTGACAACGTAGAGTTTGAGAAG
ATTCAGCAGAGGTGAAAGATGGCGTACTGTATATAACCATTCCA
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