FC876386

Overview
NameFC876386
Unique NameFC876386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length256
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:66..321. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 142.51 bits (358), Expect = 6.205e-34
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKFEHPRHGSLGFLPRKRA+R    VKAFPKDDP+K CRLT+FLGYKAGMTHIVRDV KP S LHKK+TCEAVTIIETP
Sbjct:    2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 134.806 bits (338), Expect = 1.294e-31
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETPS 248
            SHRKFEHPRHGSLGFLPRKRA R    VKAFPKDD +K C+ TAF+GYKAGMTHIVR+V KP S LHKK+TCEAVTIIETP+
Sbjct:    2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPA 83          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.764e-31
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKFEHPRHGSLGFLPRKR++R    VK+FPKDD SK C LT+F+GYKAGMTHIVR+V KP S LHKK+TCEAVTIIETP
Sbjct:    2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.307e-27
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SH KFE PRHGSLGFLPRKRA+R    VKAFPKDD SK   LTAFLGYKAGMTHIVRD+ +P S +HK++  EAVTIIETP
Sbjct:    2 SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.625e-27
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SH KFE PRHGSLGFLPRKRA+R    VKAFPKDD SK   LTAFLGYKAGMTHIVRD+ +P S +HK++  EAVT+IETP
Sbjct:    2 SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHGSLGFLPRKR++R    VK+FPKDDPSK   LTAFLGYKAGMTHIVR+V +P S ++KK+  EAVTI+ETP
Sbjct:    2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHGSLGFLPRKR++R    VK+FPKDDPSK   LTAFLGYKAGMTHIVR+V +P S ++KK+  EAVTI+ETP
Sbjct:    2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.123e-26
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHGSLGFLPRKR++R    VK+FPKDDPSK   LTAFLGYKAGMTHIVR+V +P S ++KK+   AVTI+ETP
Sbjct:    2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVVAVTIVETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.061e-25
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHGSLGFLPRKR++R    VK+FPKDD SK   LTAFLGYKAGMTHIVR+V +P S ++KK+  EAVTI+ETP
Sbjct:    2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.061e-25
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHGSLGFLPRKR++R    VK+FPKDD SK   LTAFLGYKAGMTHIVR+V +P S ++KK+  EAVTI+ETP
Sbjct:    2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETP 82          
The following BLAST results are available for this feature:
BLAST of FC876386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL32_ARATH6.205e-3485.1960S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH1.294e-3179.2760S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_ORYSJ3.764e-3179.0160S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL3B_SCHPO4.307e-2774.0760S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO5.625e-2772.8460S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_RAT1.253e-2671.6060S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_HUMAN1.253e-2671.6060S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_MACFA8.123e-2670.3760S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_MOUSE1.061e-2570.3760S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_BOVIN1.061e-2570.3760S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32004B08EF DevOvary1 Citrus clementina cDNA clone C32004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876386 ID=FC876386; Name=FC876386; organism=Citrus clementina; type=EST; length=256bp
TGTCTCACAGGAAGTTTGAGCACCCGAGGCATGGCTCCCTTGGATTTCTT
CCAAGGAAGCGAGCTGCTCGTCCCACACGATAGGTGAAGGCTTTTCCCAA
GGATGACCCAAGCAAGGCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGG
CTGGGATGACCCACATTGTGAGGGATGTCTAGAAACCTGTATCTTAGCTT
CACAAGAAGGACACCTGTGAGGCTGTTACCATTATTGAAACCCCGTCCAA
TGATGG
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