FC876413

Overview
NameFC876413
Unique NameFC876413
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10354 contig Ccv1_Contig10354:1..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.908e-72
Identity = 133/175 (76.00%), Postives = 146/175 (83.43%), Query Frame = 1
Query:  112 MAMVLHAGNTNKNAFKALITAEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDGPIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            MA+VLHAG TNKNAFK LI AEYTGV VEL  +FEMGVTNKTPE+LK+NPIGKVP+LETPDGPIFESNAIARYVARLKADNPL+GSSLID AHIEQWIDF SLEID NI+ WF PR G+AVYLP AEE             NTHLASNTYLVGH VTLADII+TCNL  GF++++
Sbjct:    1 MALVLHAGKTNKNAFKTLIVAEYTGVKVELAPDFEMGVTNKTPEYLKLNPIGKVPLLETPDGPIFESNAIARYVARLKADNPLIGSSLIDYAHIEQWIDFGSLEIDANIISWFRPRFGYAVYLPPAEEAAISALKRALGALNTHLASNTYLVGHFVTLADIIVTCNLFFGFTKLM 175          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 3.369e-69
Identity = 127/176 (72.16%), Postives = 145/176 (82.39%), Query Frame = 1
Query:  112 MAMVLHAGNTNKNAFKALITAEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDGPIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILT 639
            MA+VLHAG+ NKNAFKALI AEY+GV VELVKNF+MGV+NKTPEFLKMNPIGK+PVLETPDGP+FESNAIARYV R KADNPL GSSLI+ AHIEQW DFS+ E+D NI +W  PR+G A Y+  +EE             NTHLASNTYLVGHSVTLADI+MTCNL +GF+RI+T
Sbjct:    1 MALVLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVFESNAIARYVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMT 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.415e-67
Identity = 123/176 (69.89%), Postives = 143/176 (81.25%), Query Frame = 1
Query:  112 MAMVLHAGNTNKNAFKALITAEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDGPIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILT 639
            MA+VLH  + NKNAFKALI AEY+GV VEL KNF+MGV+NKTPE+LKMNPIGKVP+LETPDGP+FESNAIARYV R K+DNPL GSSLI+ AHIEQWIDFS+ E+D N  +W  PR+GFA Y+  +EE             NTHLASNTYLVGHSVTLADI+MTCNL +GF+RI+T
Sbjct:    1 MALVLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMT 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.198e-66
Identity = 124/175 (70.86%), Postives = 140/175 (80.00%), Query Frame = 1
Query:  112 MAMVLHAGNTNKNAFKALITAEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDGPIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            MA+VLH G+ NKNAFKALI AEYTGV VEL KNFEMGV+NKTPEFLKMNP+GK+PVLETP+G +FESNAIARYVARLK ++ L GSSLID +HIEQW+DFS+ E+D NI RW  PR+GF  Y+P  EE             NTHLASNTYLVGHSVTLADI+MTCNL  GF RIL
Sbjct:    1 MALVLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRIL 175          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.376e-61
Identity = 116/176 (65.91%), Postives = 135/176 (76.70%), Query Frame = 1
Query:  112 MAMVLHAGNTNKNAFKALITAEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDGPIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILT 639
            MA+V+H    NK A KALI AEY GV +E   +F+MGVTNK+PEFLKMNPIGKVPVLETP+GPIFESNAIARYV+R   DN L GSSLI+ AHIEQWIDFSSLEID N+L+WF PR+G+A +   AEE             NTHLASNT+LVGHSVTLADI+  CNL LGF+ ++T
Sbjct:    1 MALVMHTYKGNKGANKALIAAEYAGVKIEESADFQMGVTNKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLIEYAHIEQWIDFSSLEIDANMLKWFAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMT 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.420e-59
Identity = 115/176 (65.34%), Postives = 132/176 (75.00%), Query Frame = 1
Query:  112 MAMVLHAGNTNKNAFKALITAEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDGPIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILT 639
            MA+VLH    NK+A KALI AEY GV +++  +F+MGVTNKTP FLKMNPIGKVPVLETP+G +FESNAIARYV+RL  DN L GSSLI+ A IEQWIDFSSLEI  +ILRWF PR+GF  Y   AEE             NTHL SNTYLVGHS+TLADII  CNL LGF+ ++T
Sbjct:    1 MALVLHTYKGNKSAEKALIAAEYVGVQIDVPSDFQMGVTNKTPAFLKMNPIGKVPVLETPEGSVFESNAIARYVSRLNGDNSLNGSSLIEYAQIEQWIDFSSLEIYASILRWFGPRMGFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMT 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.583e-26
Identity = 70/166 (42.17%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  142 NKNAFKALITAEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDGP-IFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            N  AFKALI A+Y+G  +E+ K+F  G TNK+  FLK  P+GKVP  E+ DG  I ESNAIA YV    A+  L GSS ++ A I QW+ F+  EI      W  P +G   +  QA               + HL + TYLVG  +TLADI++TC L   +  +L
Sbjct:   12 NFRAFKALIAAQYSGAKLEIAKSFVFGETNKSDAFLKSFPLGKVPAFESADGHCIAESNAIAYYV----ANETLRGSSDLEKAQIIQWMTFADTEILPASCTWVFPVLGIMQFNKQATARAKEDIDKALQALDDHLLTRTYLVGERITLADIVVTCTLLHLYQHVL 173          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.026e-25
Identity = 66/169 (39.05%), Postives = 95/169 (56.21%), Query Frame = 1
Query:  142 NKNAFKALITAEYTGVNVELVKN---FEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            N  A+K LI A+Y+G  +++  +   F+ GVTNKTPEFLK  P+GKVP  E  DG  +FES+AIA YV     ++ L G++ +  A + QW+ FS   I      W  P +G   Y  QA E             ++HL + T+LVG  +TLADI +TC+L   + ++L
Sbjct:   12 NWRAYKPLIAAQYSGFPIKVASSAPEFQFGVTNKTPEFLKKFPLGKVPAFEGKDGFCLFESSAIAHYVG----NDELRGTTRLHQAQVIQWVSFSDSHIVPPASAWVFPTLGIMQYNKQATEQAKEGIKTVLGVLDSHLQTRTFLVGERITLADITVTCSLLWLYKQVL 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.482e-24
Identity = 69/178 (38.76%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  115 AMVLHAGNTNKNAFKALITAEYTGVNVELVK---NFEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            A  L+    N  AFKALI A+Y+G  V ++    +F  G TN+TPEFL+  P GKVP  E  DG  +FESNAIA YV+    +  L GS+   +A + QW+ F+  +I      W  P +G   +  QA E             +THL + T+LVG  VTLADI + C L   + ++L
Sbjct:    3 AGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
BLAST of FC876413 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.935e-24
Identity = 68/178 (38.20%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  115 AMVLHAGNTNKNAFKALITAEYTGVNVELVK---NFEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKADNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRIL 636
            A  L+    N  AFKALI A+Y+G  + ++    +F  G TN+TPEFL+  P GKVP  E  DG  +FESNAIA YV+    +  L GS+   +A + QW+ F+  +I      W  P +G   +  QA E             +THL + T+LVG  VTLADI + C L   + ++L
Sbjct:    3 AGTLYTYPENWRAFKALIAAQYSGAQIRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVL 176          
The following BLAST results are available for this feature:
BLAST of FC876413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G_PRUAV1.908e-7276.00Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G2_ORYSJ3.369e-6972.16Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G1_ORYSJ1.415e-6769.89Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G3_ORYSJ1.198e-6670.86Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G2_ARATH3.376e-6165.91Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH2.420e-5965.34Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G_ARTSA1.583e-2642.17Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1GA_XENLA1.026e-2539.05Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_MOUSE1.482e-2438.76Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1G_RAT1.935e-2438.20Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32004E04EF DevOvary1 Citrus clementina cDNA clone C32004E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876413 ID=FC876413; Name=FC876413; organism=Citrus clementina; type=EST; length=639bp
GTACACGAATACTACACTCACTAAACCTCGCAAGACCAAGCCGTTGACAC
AATCGCTCTGATTCGCTGTTTGATCTTGGGTTGTTAACTGAAGTAAAATC
TTTCTGAAGCAATGGCTATGGTCTTGCATGCAGGGAACACCAATAAAAAT
GCTTTTAAAGCACTTATTACTGCAGAGTACACTGGGGTAAATGTTGAATT
GGTCAAGAATTTTGAGATGGGTGTAACAAACAAAACTCCTGAATTTCTTA
AGATGAATCCCATTGGAAAGGTTCCTGTGTTGGAAACACCTGATGGACCC
ATCTTCGAGAGTAATGCCATTGCACGATATGTTGCACGCTTGAAAGCTGA
CAACCCACTGTTGGGCTCGTCTTTAATTGATTCTGCTCATATTGAGCAGT
GGATTGATTTCTCATCATTAGAAATTGACACCAATATTTTGCGTTGGTTT
ATACCAAGAGTTGGTTTCGCGGTGTACCTTCCTCAGGCTGAGGAAGCTGC
AATTGCTTCTTTGAAGAGAGCTCTAGCTGCATTGAATACACATCTCGCTT
CCAACACTTACTTAGTTGGCCATTCAGTGACTTTGGCTGATATCATTATG
ACATGTAACTTGACGTTGGGATTCAGTCGGATCCTGACC
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