FC876480

Overview
NameFC876480
Unique NameFC876480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14362 contig Ccv1_Contig14362:14..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876480 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 2 
Query:  137 DPDFSGS--ARFDKPRISAARVIGASTASFSGLASLIFRFPPNFVRQLITKARRNCSNIGVAQI 322
            DPD  GS      + R+ A+  I +S    +GL+S I RFPPNFVRQL  KARRNCSNIGVAQI
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQI 88
The following BLAST results are available for this feature:
BLAST of FC876480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH3.952e-1157.81Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2CC06RM1 EHR Citrus clementina cDNA clone KN0AAN2CC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876480 ID=FC876480; Name=FC876480; organism=Citrus clementina; type=EST; length=491bp
GCACGAGGTTCTTATCATAGAATACAGAGAGAGCAAAGCCGCCGTTCAAT
ACGACGTCGTAATGGCCGTGTCCTCATGTTCGAGTCAAAAAATTTTGTCC
TTCTCTTCTTCATGTTCGTCTTTTGAGTGCCGTTCCGATCCCGACTTCTC
GGGCTCGGCTCGGTTTGATAAACCGAGGATCTCGGCGGCGCGAGTCATCG
GAGCGTCGACGGCGTCGTTTAGCGGCCTGGCGTCTCTGATTTTCAGGTTT
CCGCCGAACTTCGTGCGCCAGCTTATCACGAAGGCCAGGAGGAACTGCAG
CAACATCGGCGTGGCGCAAATCGTGGCGGCTTCGTGGTCGAACGGTGTGG
GTTCCGGCTCTAACTCGGCGGCGGCTGCATCAGCTTCCGCTGCCCCCGCC
CCGCCCGTCCCCGTCGAGATTACGAGGGGCGATGACATCGCGCTTGTTGA
CGGATTGAAAAATGTACTTCTGGAAGCCCATCTCTGATTTG
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