FC876487

Overview
NameFC876487
Unique NameFC876487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10371 contig Ccv1_Contig10371:1..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.863e-22
Identity = 75/201 (37.31%), Postives = 102/201 (50.75%), Query Frame = 1
Query:   28 FSNILTACNSYTPAATLSTQRSVNSLATGHSKQSELAVSHPQQRPCPVPVSVKVNSTNQAMHKLDHKLDSLEDLG---------HISPATDQSASSSFCNGAVSRLNSMGYGSACGSNSNLDQVTAGRAAAESKNEEGLFPSNGNLR-SIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLP 600
            FSN L   NS+   ++  T   +N++       +  +   P     P P SV  +  +   H  + K + L+D           ++S AT+ SA  +                      ++DQ+       E KNE+G   S G ++ S+QREAAL KFR+KRKDRCY+KKVRYESRKKLAEQRPR+KGQFVRQV S   P
Sbjct:  390 FSNQL---NSWPGQSSYPTPTPINNIQFRDPNTAYTSAMAPASLS-PSPSSVSPHEYSSMFHPFNSKPEGLQDRDCSMDVDERRYVSSATEHSAIGN----------------------HIDQLI------EKKNEDGYSLSVGKIQQSLQREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQSTQAP 558          
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.152e-21
Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  253 HISPATDQSASSSFCNGAVSRLNSMGYGSACGSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVH 585
            H+SP T +S SS+  + A   L+    GS C S+SN        +    +N +GL   +      QREAALNKFRLKRKDRC++KKVRY+SRK LAEQRPRVKGQFVRQ H
Sbjct:  518 HVSPTTGESGSSTVLDSARKTLS----GSVCDSSSNHMIAPTESSNVVPENPDGLRHLS------QREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQDH 618          
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.114e-17
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1
Query:  346 GSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSE 591
            GS S  + + AG++++  K +E         RS QREAAL KFRLKRKDRC+DKKVRY+SRKKLAEQRPRVKGQFVR V+S+
Sbjct:  384 GSQSTNEGI-AGQSSSTEKPKEEESAKQRWSRS-QREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSD 463          
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.208e-16
Identity = 52/110 (47.27%), Postives = 68/110 (61.82%), Query Frame = 1
Query:  331 YGSACGSNSNLDQVTAGRAAAESKNEEGLFPSNG----NL----RSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLPLESENHSGNISD 636
            YGS+ G N+    + +   A ++ N +G    +G    NL    +  QREAAL KFR KRK+RC+ KKVRY+SRKKLAEQRPRV+GQFVR+  + T     +N   NI D
Sbjct:  621 YGSSNGMNAGGMNMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAAAT----DDNDIKNIED 726          
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: APRR3_ARATH (Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.883e-16
Identity = 52/122 (42.62%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  220 DHKLDSLEDLGHISPATDQSASSSFCNGAVS--RLNSMGYGSACGSNSNLDQVTAGRAAAESKNEEGLFPSNGNLRSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQ 579
            D+K+     L H    ++ SA S + NGA S  +       S    +S + ++    +++++  ++    S+G+ R  QREAAL KFRLKRK+RC++KKVRY SRKKLAEQRP VKGQF+R+
Sbjct:  370 DYKVGDRSVLRH----SNLSAFSKYNNGATSAKKAPEENVESCSPHDSPIAKLLGSSSSSDNPLKQ---QSSGSDRWAQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRK 484          
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: PRR1_ORYSJ (Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.418e-13
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  439 RSIQREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVH 585
            RS +R AAL KFRLKRK+RC+DKKVRY +RKKLAE RPRV+GQFVRQ +
Sbjct:  439 RSERRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQAN 487          
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: APRR1_ARATH (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  448 QREAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSETLPLESENHSGNISD 636
            +RE AL KFR KR  RC+DKK+RY +RK+LAE+RPRVKGQFVR+++   + L  +  S +  D
Sbjct:  532 RREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLNGQPDSADYDD 594          
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12
Identity = 69/213 (32.39%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   10 TDSEKNFSNILTACNSYTPAATLSTQRSVNSLATGHSKQSELAVSHPQQRPCPVPVSVKVNSTNQAMHKLDHKLDSLEDLGHISPAT------DQSASSSFCNGAVSRLNSMGYGSACGSNSNLDQVTAGRAAAE----SKNEEGLFPSNGN----------LRSIQRE---AALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQ 579
            T+ E+  S      N +T A   +   +  +  TG  K  E+A ++  +R  P  V   +    + +    H   S E+ G  +P        D        N  V+  NS     + G N +   V A R   E    + N+ G    NG+           R  QRE   AA+ KFR KRK+R + KKVRY+SRK+LAEQRPRV+GQFVRQ
Sbjct:  513 TNKERVMSPSAVKANGHTSAFHPAQHWTSPANTTGKEKTDEVA-NNAAKRAQPGEVQSNLVQHPRPILHYVHFDVSRENGGSGAPQCGSSNVFDPPVEGHAANYGVNGSNSGSNNGSNGQNGSTTAVNAERPNMEIANGTINKSGPGGGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQ 724          
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12
Identity = 69/213 (32.39%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   10 TDSEKNFSNILTACNSYTPAATLSTQRSVNSLATGHSKQSELAVSHPQQRPCPVPVSVKVNSTNQAMHKLDHKLDSLEDLGHISPAT------DQSASSSFCNGAVSRLNSMGYGSACGSNSNLDQVTAGRAAAE----SKNEEGLFPSNGN----------LRSIQRE---AALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQ 579
            T+ E+  S      N +T A   +   +  +  TG  K  E+A ++  +R  P  V   +    + +    H   S E+ G  +P        D        N  V+  NS     + G N +   V A R   E    + N+ G    NG+           R  QRE   AA+ KFR KRK+R + KKVRY+SRK+LAEQRPRV+GQFVRQ
Sbjct:  513 TNKERVMSPSAVKANGHTSAFHPAQHWTSPANTTGKEKTDEVA-NNAAKRAQPGEVQSNLVQHPRPILHYVHFDVSRENGGSGAPQCGSSNVFDPPVEGHAANYGVNGSNSGSNNGSNGQNGSTTAVNAERPNMEIANGTINKSGPGGGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQ 724          
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1
Query:  451 REAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSE 591
            REAALNKFR KRK R + KKVRY+SRK+LAEQRPR++GQFVRQ   E
Sbjct:  712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQE 758          
The following BLAST results are available for this feature:
BLAST of FC876487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APRR5_ARATH4.863e-2237.31Two-component response regulator-like APRR5 OS=Ara... [more]
PRR95_ORYSJ3.152e-2153.15Two-component response regulator-like PRR95 OS=Ory... [more]
APRR9_ARATH2.114e-1762.20Two-component response regulator-like APRR9 OS=Ara... [more]
APRR7_ARATH5.208e-1647.27Two-component response regulator-like APRR7 OS=Ara... [more]
APRR3_ARATH8.883e-1642.62Two-component response regulator-like APRR3 OS=Ara... [more]
PRR1_ORYSJ1.418e-1375.51Two-component response regulator-like PRR1 OS=Oryz... [more]
APRR1_ARATH2.048e-1253.97Two-component response regulator-like APRR1 OS=Ara... [more]
PRR37_ORYSJ4.562e-1232.39Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSI4.562e-1232.39Two-component response regulator-like PRR37 OS=Ory... [more]
PRR73_ORYSJ5.959e-1274.47Two-component response regulator-like PRR73 OS=Ory... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CD02RM1 EHR Citrus clementina cDNA clone KN0AAN2CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876487 ID=FC876487; Name=FC876487; organism=Citrus clementina; type=EST; length=829bp
GAATTCGAAACTGATTCTGAGAAGAATTTTTCCAATATTCTTACTGCCTG
TAACTCTTATACTCCAGCTGCCACTCTAAGCACCCAAAGAAGTGTTAACT
CTCTGGCTACTGGTCACTCTAAGCAATCTGAACTTGCAGTGTCACACCCT
CAACAGCGGCCATGTCCTGTCCCTGTTTCAGTGAAAGTTAATTCGACCAA
TCAAGCTATGCACAAGTTAGATCACAAGTTAGACTCTCTGGAGGATCTAG
GGCATATTTCTCCTGCTACTGATCAGAGTGCAAGTAGCAGTTTCTGTAAT
GGTGCTGTAAGTCGACTAAACAGCATGGGGTATGGAAGTGCTTGTGGAAG
TAACAGCAATTTGGATCAGGTTACTGCTGGAAGGGCTGCTGCAGAGAGCA
AGAATGAAGAAGGTTTATTCCCTTCCAATGGCAACTTGCGATCAATACAA
AGAGAAGCAGCTCTTAATAAGTTCCGGTTAAAGCGGAAAGACAGATGTTA
TGATAAGAAGGTCCGGTACGAAAGTAGAAAAAAACTTGCAGAACAGCGTC
CCAGAGTCAAAGGACAATTTGTTCGTCAAGTACATTCGGAGACTCTACCC
CTAGAATCTGAGAATCACTCTGGCAATATATCAGATGGTTAGTGTATAAA
CATATCATAGTTAGAATGGGGATAGAATAGTATATGACTTAGATTAGGTT
TACATTTCTTATAGTGGTTGTGCTGACTTCAGATCCATGTTTGTTCGTAT
ATATGTAAATGACAGATAATACAATTATACAGTGTATCTTTTGTGACAGC
AGCGTTGTAACATATGTATTCCCATTCTT
back to top