FC876516

Overview
NameFC876516
Unique NameFC876516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length777
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876516_ssr199 microsatellite FC876516_ssr199:199..208. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10365 contig Ccv1_Contig10365:1..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876516 vs. ExPASy Swiss-Prot
Match: UBP23_ARATH (Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.320e-17
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 2 
Query:  218 NGAVLATDQQLPKYSDSVSEANQQDAVELGALKDGRKDALL--EGMSMLTRGLEETTIARWDGIDLHPHNVESNGTESVSIGYVLDDWDEEYDQGKRKKLRQNRHSFGGPNPFQ 553
            +GAV  +DQQ P  S  +SEA+Q         K  R+  LL  E +++LTRG+ ET +A+WD          S    + SIGYV D+WDEEYD+GK+KK+R    S+ GPNPFQ
Sbjct:  727 DGAV-TSDQQQPVGSSDLSEASQN-------AKRKRESVLLQKEAVNILTRGVPETVVAKWDEEISASQKRGSKSEGASSIGYVADEWDEEYDRGKKKKIRIKEESYRGPNPFQ 832
The following BLAST results are available for this feature:
BLAST of FC876516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBP23_ARATH9.320e-1744.74Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2CF12RM1 EHR Citrus clementina cDNA clone KN0AAN2CF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876516 ID=FC876516; Name=FC876516; organism=Citrus clementina; type=EST; length=777bp
GCACGAGGGTTTCAGCAAAGAACTCTTGTCAGAGAGAGATTGTTCTCCAT
CATCTGTTGGGCCATCAAACTCTGATAATACCAGTAGAATTTCTAGAAGT
TCCTTTCATTCTAGAAAGAAGTTAGCTAATGGTATTGCTCTGAAGAATGC
CAAAACTAGTAACGGTGATTCCTCGATGAATGGTATAGACGGAGAGTTGA
GAGAGAGAAATAATCTGAATGGTGCTGTGTTGGCAACAGACCAGCAATTA
CCAAAGTATTCTGATTCTGTCTCGGAAGCAAACCAGCAGGATGCAGTAGA
ACTTGGTGCTTTAAAAGATGGCAGAAAAGATGCACTGCTGGAAGGGATGA
GTATGCTTACCCGAGGTCTGGAGGAAACAACTATTGCAAGGTGGGATGGG
ATTGACTTGCATCCTCATAATGTAGAATCTAATGGTACAGAGAGTGTCAG
CATCGGCTATGTTCTAGATGACTGGGACGAAGAATATGATCAGGGCAAGA
GAAAGAAGCTAAGGCAGAATAGGCACAGCTTCGGTGGGCCAAATCCCTTC
CAAGAAATTGCAGCCAAGAAGACGCGATTGAAGAAGGCAAAGCTAAGCTA
TGCCAGTTCTGCAGATCAACCATTCAGGATATGAAGATATCAATTTGATG
CCCTGACACTCCAAGACAAGTAATTTTGACCGGTAAGACCACTCTTATAT
GATATGTAGTGATTGTTTCTGTATTTAAGGGAGCCTTGGAAAAAAAAATC
CAAAATTTTAGAATTTTTCTTATTTGT
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