FC876525

Overview
NameFC876525
Unique NameFC876525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15135 contig Ccv1_Contig15135:460..1181. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.442e-45
Identity = 93/119 (78.15%), Postives = 97/119 (81.51%), Query Frame = -1
Query:  366 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 722
            A AN LNKEFGSKLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR  GT+MRRKMW+QNM                  LSVCHGFKC
Sbjct:  101 AQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.481e-45
Identity = 91/119 (76.47%), Postives = 96/119 (80.67%), Query Frame = -1
Query:  366 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 722
            A AN LNKEFGSKLKEHMQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QGTKM+RK+W +NM                  LSVCHGFKC
Sbjct:  101 AKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKC 219          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 91/119 (76.47%), Postives = 96/119 (80.67%), Query Frame = -1
Query:  366 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 722
            A AN LN+EFGSKLKEHMQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QGTK+RRKMW +NM                  LSVC GFKC
Sbjct:  166 AQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKC 284          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 91/119 (76.47%), Postives = 95/119 (79.83%), Query Frame = -1
Query:  366 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 722
            A AN LNKEFGSKLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QGT+MRRKMW QNM                  LS+C GF C
Sbjct:  101 AQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNC 219          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.552e-34
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = -1
Query:  366 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 722
            A+A  LNKEFG  +KEHM Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + +L DKTENLRSQAQ++++QGT++RRK+W QNM                  +SVCHGF C
Sbjct:  102 AIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNC 220          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.697e-34
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = -1
Query:  366 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 722
            +VA  L++EFG  LKEHMQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIELLVDKTENL+ QA  F++QG ++RRKMW+Q++                  +  C GFKC
Sbjct:  120 SVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.340e-26
Identity = 66/117 (56.41%), Postives = 74/117 (63.25%), Query Frame = -1
Query:  366 ANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHGFKC 716
            AN LNKEFGS LKEHMQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG   E+L     +  SQ Q F  + T+M+RK W QNM                  LSVC GF C
Sbjct:  103 ANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNC 215          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = -1
Query:  375 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHG 722
            A A  +N EF   L + M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKTEN++     FR+Q  + R  MW +N+                    VCHG
Sbjct:   99 AQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYIAMAFVCHG 213          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.465e-15
Identity = 37/91 (40.66%), Postives = 63/91 (69.23%), Query Frame = -1
Query:  450 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQN 722
            A A  +N EF   L + M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT  ++  +  FR+Q  ++RR +W++N
Sbjct:   99 APAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKN 188          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 40/116 (34.48%), Postives = 66/116 (56.90%), Query Frame = -1
Query:  375 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHG 722
            A+A  +N+EF   L + + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT N++     FR+Q  + R  +W +N                     +CHG
Sbjct:   98 ALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHG 212          
The following BLAST results are available for this feature:
BLAST of FC876525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VA721_ARATH1.442e-4578.15Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA726_ARATH5.481e-4576.47Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH3.552e-4476.47Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA722_ARATH3.552e-4476.47Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA724_ARATH2.552e-3457.98Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH9.697e-3457.98Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA723_ARATH3.340e-2656.41Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA713_ARATH6.981e-1637.07Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA714_ARATH3.465e-1540.66Vesicle-associated membrane protein 714 OS=Arabido... [more]
VA711_ARATH4.525e-1534.48Vesicle-associated membrane protein 711 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CG10RM1 EHR Citrus clementina cDNA clone KN0AAN2CG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876525 ID=FC876525; Name=FC876525; organism=Citrus clementina; type=EST; length=722bp
GCACGAGGCTCGAGTTTTTTTTTTTTTTTTTTTTCTGCAGGTATCCAACT
ATTGTTCCATTACATCTTAAACTAAAATCCACATAAAGCAGCAGGCAGCA
TAAGACAACAGCAGGCAGCATAAAATATTTATCTATTTCGAGGAGTTCAA
GCATATAACCTATACAAGCAATCGAAAAGATACAAATTCATTCCCTTGCC
AAGGGGCAAGTAAGGGCATGATGACCTAAAAGAGGGGAAAAAGAAAACAT
AAACAAAAACAAGCGTGAGAGATGCAAGGATCAAAAGATGTGGCCAATGT
ACCAAGTCGACCATGTCAGCGGGACAGCAAAGCACAGTTTCCAGGGACTT
TCCAAGACCAAATCAACATTTGAAGCCATGGCAAACTGACAGAACGATGA
TAAGGATCAATGCGATGATGATACCCAAAACGATCAATTTAATCTTCATA
TTCTGGATCCACATCTTCCTTCTCATCTTCGTCCCCTGTTGTCGGAAATC
TTGTGCCTGTGACCGAAGGTTCTCAGTTTTGTCAACCAGCAGCTCAATCT
TCTCACCACGATCAAGAACCTTCTCAATATTTTCCATCATAACCCCCTTG
ACTTCAGAAACCTGAGCTTTGACTTTGGCAAGCTTGCTGATCTCTTCAGG
ATGATCCACACAATACTGCATGTGCTCCTTTAGTTTAGACCCAAACTCTT
TGTTCAGGCAATTTGCAACAGC
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