FC876534
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876534 vs. ExPASy Swiss-Prot
Match: U737_TOBAC (UPF0737 protein mc410 OS=Nicotiana tabacum GN=MC410 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.621e-41 Identity = 96/207 (46.38%), Postives = 126/207 (60.87%), Query Frame = 1 Query: 13 NISRSAEIEEEKQSDAGNKRKMLFDEVNNKKRLEREALPSDLHDXXXXXXXXXXXXEGSTAENEDVAESEVEGSTSRMVSHQDDGSKRYITVGGSSEVPKEVRGFPDSSVVDAHGQKRFNGSSENEFKVGNISYGVPFSVQPMNIMNIPYTISVREANSXGVPGTS-----VVGMTQKMPTASGERSGAQPVNPGNTPVMFGYSPVQ 618 N SR E+EE++++D G+KRK LF E + +K+ ERE +D HD EGSTAENEDVA+SE GSTSR + D+ SKR++ G +EV KE+R P SS V+ GQ+RF SSE + K GNI Y +PF Q +NIMN+PY++ + NS V TS V G+ Q M T +R + PV P P+MFGYS VQ Sbjct: 100 NDSRPVEVEEDRRADVGDKRKNLFRESSQQKKQEREGHHADTHDKTRTSHISITTDEGSTAENEDVADSETVGSTSRQILQHDESSKRFVGSSGLAEVHKELRSVPASSGVELIGQRRFTISSEKDVKFGNIPYTIPFQGQSINIMNLPYSMPL---NSNTVSTTSTTSYPVPGVMQLMATTCVDRPPSHPVIPAYLPLMFGYSSVQ 303
BLAST of FC876534 vs. ExPASy Swiss-Prot
Match: U7375_ARATH (UPF0737 protein At4g28910 OS=Arabidopsis thaliana GN=AFPH2 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22 Identity = 72/200 (36.00%), Postives = 104/200 (52.00%), Query Frame = 1 Query: 34 IEEEKQSDAGNKRKMLFDEVNNKKRLEREALPSDLHD-XXXXXXXXXXXXEGSTAENEDVAESEVEGSTSRMVSHQDDGSKRYITVGGSSEVPKEVRGFPDSSVVD-AHGQKRFN--GSSENEFKVGNISYGVPFSVQPMNIM-NIPYTISVREANSXGVPGTSVVGMTQKMPTASGERSGAQPVNPGNTPVMFGYSPVQ 618 +E+E + +AGNKRK F +N+ K+ E+++ D+H+ EGSTAENEDVAESEV G +S S+ + VR D+++VD GQ+R N GS EF + N+SY VPF+V P N++ ++PY++ +E+ G + P A N GN P+MFGYSPVQ Sbjct: 104 VEDESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGSTAENEDVAESEVGGGSS------------------SNHAKEVVRPPTDTNIVDNLTGQRRSNHGGSGTEEFTMRNMSYTVPFTVHPQNVVTSMPYSLPTKES------GQHAAATSLLQPNA----------NAGNLPIMFGYSPVQ 269
BLAST of FC876534 vs. ExPASy Swiss-Prot
Match: U7374_ORYSJ (UPF0737 protein Os05g0558800 OS=Oryza sativa subsp. japonica GN=Os05g0558800 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11 Identity = 59/201 (29.35%), Postives = 90/201 (44.78%), Query Frame = 1 Query: 46 KQSDAGNKRKMLFDEVNNKKRLEREALPSDLHDXXXXXXXXXXXX-----EGSTAENEDVAESEVEGSTSRMVSHQDDGSKRYITVGGSSEVPKEVRGFPDSSVVDAHGQKRFNGSSENEFKVGNISYGVPFSVQPMNIMNIPYTISVREANSXGVPG----TSVVGMTQKMPTASGERSGAQPVNPGNT-PVMFGYSPVQ 618 +Q +KRK+L +E++ +K+ A D +GST ENEDVAESE EGS S +V+ ++D +K + GS + D + V G KR S +E G + G P S+Q N++ +PY + + + + T V + + PT +G V G+T V FGY VQ Sbjct: 99 EQKPVSSKRKLLSEEISFQKKPNTAAEQPDAFSKSSDGGVKNAPISISTDDGSTGENEDVAESEAEGSNSWLVAQREDSAKGSVVNRGSDR-----KRSSDDAAVGFQG-KRQPSFSGSESSSGKLPQGNPLSLQASNVVAVPYQVPSQVSAPPSITNASNFTPVCTVQLRPPTNNG-----LAVTMGSTSQVAFGYPAVQ 288 The following BLAST results are available for this feature:
BLAST of FC876534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876534 ID=FC876534; Name=FC876534; organism=Citrus clementina; type=EST; length=619bpback to top |