FC876534

Overview
NameFC876534
Unique NameFC876534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11066 contig Ccv1_Contig11066:493..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876534 vs. ExPASy Swiss-Prot
Match: U737_TOBAC (UPF0737 protein mc410 OS=Nicotiana tabacum GN=MC410 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.621e-41
Identity = 96/207 (46.38%), Postives = 126/207 (60.87%), Query Frame = 1
Query:   13 NISRSAEIEEEKQSDAGNKRKMLFDEVNNKKRLEREALPSDLHDXXXXXXXXXXXXEGSTAENEDVAESEVEGSTSRMVSHQDDGSKRYITVGGSSEVPKEVRGFPDSSVVDAHGQKRFNGSSENEFKVGNISYGVPFSVQPMNIMNIPYTISVREANSXGVPGTS-----VVGMTQKMPTASGERSGAQPVNPGNTPVMFGYSPVQ 618
            N SR  E+EE++++D G+KRK LF E + +K+ ERE   +D HD            EGSTAENEDVA+SE  GSTSR +   D+ SKR++   G +EV KE+R  P SS V+  GQ+RF  SSE + K GNI Y +PF  Q +NIMN+PY++ +   NS  V  TS     V G+ Q M T   +R  + PV P   P+MFGYS VQ
Sbjct:  100 NDSRPVEVEEDRRADVGDKRKNLFRESSQQKKQEREGHHADTHDKTRTSHISITTDEGSTAENEDVADSETVGSTSRQILQHDESSKRFVGSSGLAEVHKELRSVPASSGVELIGQRRFTISSEKDVKFGNIPYTIPFQGQSINIMNLPYSMPL---NSNTVSTTSTTSYPVPGVMQLMATTCVDRPPSHPVIPAYLPLMFGYSSVQ 303          
BLAST of FC876534 vs. ExPASy Swiss-Prot
Match: U7375_ARATH (UPF0737 protein At4g28910 OS=Arabidopsis thaliana GN=AFPH2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 72/200 (36.00%), Postives = 104/200 (52.00%), Query Frame = 1
Query:   34 IEEEKQSDAGNKRKMLFDEVNNKKRLEREALPSDLHD-XXXXXXXXXXXXEGSTAENEDVAESEVEGSTSRMVSHQDDGSKRYITVGGSSEVPKEVRGFPDSSVVD-AHGQKRFN--GSSENEFKVGNISYGVPFSVQPMNIM-NIPYTISVREANSXGVPGTSVVGMTQKMPTASGERSGAQPVNPGNTPVMFGYSPVQ 618
            +E+E + +AGNKRK  F  +N+ K+ E+++   D+H+             EGSTAENEDVAESEV G +S                  S+   + VR   D+++VD   GQ+R N  GS   EF + N+SY VPF+V P N++ ++PY++  +E+      G      +   P A          N GN P+MFGYSPVQ
Sbjct:  104 VEDESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGSTAENEDVAESEVGGGSS------------------SNHAKEVVRPPTDTNIVDNLTGQRRSNHGGSGTEEFTMRNMSYTVPFTVHPQNVVTSMPYSLPTKES------GQHAAATSLLQPNA----------NAGNLPIMFGYSPVQ 269          
BLAST of FC876534 vs. ExPASy Swiss-Prot
Match: U7374_ORYSJ (UPF0737 protein Os05g0558800 OS=Oryza sativa subsp. japonica GN=Os05g0558800 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 59/201 (29.35%), Postives = 90/201 (44.78%), Query Frame = 1
Query:   46 KQSDAGNKRKMLFDEVNNKKRLEREALPSDLHDXXXXXXXXXXXX-----EGSTAENEDVAESEVEGSTSRMVSHQDDGSKRYITVGGSSEVPKEVRGFPDSSVVDAHGQKRFNGSSENEFKVGNISYGVPFSVQPMNIMNIPYTISVREANSXGVPG----TSVVGMTQKMPTASGERSGAQPVNPGNT-PVMFGYSPVQ 618
            +Q    +KRK+L +E++ +K+    A   D                    +GST ENEDVAESE EGS S +V+ ++D +K  +   GS       +   D + V   G KR    S +E   G +  G P S+Q  N++ +PY +  + +    +      T V  +  + PT +G       V  G+T  V FGY  VQ
Sbjct:   99 EQKPVSSKRKLLSEEISFQKKPNTAAEQPDAFSKSSDGGVKNAPISISTDDGSTGENEDVAESEAEGSNSWLVAQREDSAKGSVVNRGSDR-----KRSSDDAAVGFQG-KRQPSFSGSESSSGKLPQGNPLSLQASNVVAVPYQVPSQVSAPPSITNASNFTPVCTVQLRPPTNNG-----LAVTMGSTSQVAFGYPAVQ 288          
The following BLAST results are available for this feature:
BLAST of FC876534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
U737_TOBAC1.621e-4146.38UPF0737 protein mc410 OS=Nicotiana tabacum GN=MC41... [more]
U7375_ARATH3.755e-2236.00UPF0737 protein At4g28910 OS=Arabidopsis thaliana ... [more]
U7374_ORYSJ2.982e-1129.35UPF0737 protein Os05g0558800 OS=Oryza sativa subsp... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2CH08RM1 EHR Citrus clementina cDNA clone KN0AAN2CH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876534 ID=FC876534; Name=FC876534; organism=Citrus clementina; type=EST; length=619bp
GCACGAGGCTCAAACATCAGCAGGTCTGCCGAGATTGAGGAGGAAAAACA
ATCTGACGCTGGTAATAAACGAAAAATGCTGTTTGATGAGGTAAATAATA
AAAAAAGACTTGAGAGGGAAGCACTTCCTTCTGATTTACATGACAAGACA
AAGACGTCTCATATTTCCATAACAACAACGGAAGGCTCGACTGCTGAAAA
TGAAGATGTGGCGGAGTCTGAAGTTGAGGGTTCAACCTCAAGGATGGTTT
CTCACCAAGATGATGGCTCCAAACGATACATTACAGTTGGTGGTTCCTCT
GAGGTTCCAAAGGAGGTTCGGGGGTTTCCTGATTCGAGTGTTGTAGACGC
ACATGGACAAAAGAGGTTTAATGGTTCTTCAGAAAATGAATTTAAGGTCG
GAAACATAAGTTATGGCGTTCCATTCTCAGTTCAACCAATGAACATTATG
AATATACCTTACACCATATCTGTGCGGGAGGCTAACTCANCTGGAGTCCC
TGGCACATCAGTAGTTGGCATGACACAGAAGATGCCTACTGCAAGTGGTG
AGCGATCAGGAGCCCAGCCTGTGAACCCTGGAAACACACCAGTTATGTTT
GGCTACTCGCCTGTCCAAC
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