FC876538

Overview
NameFC876538
Unique NameFC876538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10447 contig Ccv1_Contig10447:4..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876538 vs. ExPASy Swiss-Prot
Match: IM30_PEA (Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.623e-48
Identity = 105/158 (66.46%), Postives = 124/158 (78.48%), Query Frame = 1
Query:  187 MVKKPLTTSFFNGG-VGALKVTRLRIAPSRRSYCYTQGGGALNTRMNLFDRLSRLVKSYAHAILISFEDP*KIL*QAVLEMNDDLVKMRHATAQLLASHKRLEHKYKAAYQASEHWYRKSQLALQKREQDLAREALNRRKSYADNANALKAQLDQQNN 657
            ++KKPL T+ F    V  LK   +RIA   R      GGGA+  RMNLFDR +R+VKSYA+A++ +FEDP KIL QAVLEMNDDL KMR ATAQ+LAS KRLE+KYKAA QASE WYRK+QLALQK E+DLAREAL RRKS+ADNA++LKAQLDQQ +
Sbjct:   22 LLKKPLATTLFGTRPVDTLKFRVMRIAKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSLKAQLDQQKS 173          
BLAST of FC876538 vs. ExPASy Swiss-Prot
Match: IM30_ARATH (Probable membrane-associated 30 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At1g65260 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.898e-45
Identity = 103/187 (55.08%), Postives = 127/187 (67.91%), Query Frame = 1
Query:   94 MAAKSQIVTGFTMPMTXXXXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPSRRSYCYTQGGGALNTRMNLFDRLSRLVKSYAHAILISFEDP*KIL*QAVLEMNDDLVKMRHATAQLLASHKRLEHKYKAAYQASEHWYRKSQLALQKREQDLAREALNRRKSYADNANALKAQLDQQ 651
            MA K+  VTG   P+               C ++  PL TSFF    GAL+V  LR+A   R  C   G GA    MNLF+R SR+VKSYA+A++ SFEDP KIL Q V+EMN DL KMR ATAQ+LAS K+L++KYKAA Q+S+ WY+++QLAL K ++DLAREAL RRKS+ADNA ALK QLDQQ
Sbjct:    1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATALKTQLDQQ 182          
BLAST of FC876538 vs. ExPASy Swiss-Prot
Match: IM30_ORYSJ (Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.140e-43
Identity = 98/150 (65.33%), Postives = 116/150 (77.33%), Query Frame = 1
Query:  202 LTTSFFNGGVGALKVTRLRIAPSRRSYCYTQGGGALNTRMNLFDRLSRLVKSYAHAILISFEDP*KIL*QAVLEMNDDLVKMRHATAQLLASHKRLEHKYKAAYQASEHWYRKSQLALQKREQDLAREALNRRKSYADNANALKAQLDQQ 651
            L TSF NG V +L++ ++R +   R  C          R NL DR SR+VKSYA+A+L SFEDP KIL QAVLEMNDDL KMR ATAQ+LAS KRLE+KYKAA QAS+ WYR++QLALQK ++DLAREAL RRKSYADNA++LKAQLDQQ
Sbjct:   27 LRTSFLNGSV-SLRLIQVRQSNVNRFKCN-------GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQ 168          
BLAST of FC876538 vs. ExPASy Swiss-Prot
Match: Y617_SYNY3 (Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803) GN=sll0617 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.722e-19
Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  319 MNLFDRLSRLVKSYAHAILISFEDP*KIL*QAVLEMNDDLVKMRHATAQLLASHKRLEHKYKAAYQASEHWYRKSQLALQKREQDLAREALNRRKSYADNANALKAQLDQQ 651
            M LFDRL R+V++  + ++   EDP K+L QAV++M +DLV++R A A+ +A  KR E +     Q ++ W  +++LAL   E++LAREAL R+KS  D A A + QL QQ
Sbjct:    1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQ 111          
The following BLAST results are available for this feature:
BLAST of FC876538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IM30_PEA2.623e-4866.46Membrane-associated 30 kDa protein, chloroplastic ... [more]
IM30_ARATH7.898e-4555.08Probable membrane-associated 30 kDa protein, chlor... [more]
IM30_ORYSJ1.140e-4365.33Probable membrane-associated 30 kDa protein, chlor... [more]
Y617_SYNY39.722e-1944.14Uncharacterized protein sll0617 OS=Synechocystis s... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1AA03RM1 EHR Citrus clementina cDNA clone KN0AAN1AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876538 ID=FC876538; Name=FC876538; organism=Citrus clementina; type=EST; length=658bp
GCACGAGGAATTTCTCGTCTTCTATCCAAAAGCACTCTGAAAACCAATCG
TTCTGTTTCCTGACCATAATTGAACTTGTGGGCATCCCGCACAATGGCCG
CAAAGTCACAGATAGTTACGGGATTCACCATGCCCATGACACCACCGCCG
TCCTCTTCTTCCTCGAGCTCTAGCAACAGTCTCTGCATGGTCAAGAAACC
CCTCACGACGTCATTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTACAA
GGTTAAGGATTGCTCCTTCCCGCCGATCCTATTGTTATACACAAGGTGGA
GGAGCACTTAATACACGAATGAACCTATTTGATAGGTTATCAAGACTTGT
GAAGTCCTATGCACATGCAATTCTGATTTCCTTTGAAGATCCCTAGAAGA
TTTTATAGCAAGCAGTACTTGAAATGAATGATGACTTGGTAAAGATGCGC
CATGCCACGGCACAACTGTTGGCATCTCACAAGCGGTTGGAACATAAGTA
CAAAGCTGCATACCAAGCTTCTGAACACTGGTATCGCAAATCACAGCTTG
CTCTTCAAAAACGGGAACAAGATCTGGCACGTGAGGCTCTCAACAGACGC
AAATCTTATGCAGATAATGCTAATGCTTTGAAAGCTCAACTTGATCAACA
AAACAATG
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