FC876545

Overview
NameFC876545
Unique NameFC876545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876545_ssr142 microsatellite FC876545_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876545_ssr423 microsatellite FC876545_ssr423:423..437. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9207 contig Ccv1_Contig9207:11..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876545 vs. ExPASy Swiss-Prot
Match: ZN207_HUMAN (Zinc finger protein 207 OS=Homo sapiens GN=ZNF207 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.764e-29
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:  172 WCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIP 396
            WC+YC+R+FDDEKIL+QHQKAKHFKCH+CHKKL T  G+AIH +QVHKE +  VPNA PGR   ++EIYGM+GIP
Sbjct:   12 WCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIP 86
[Close]
BLAST of FC876545 vs. ExPASy Swiss-Prot
Match: ZN207_PONAB (Zinc finger protein 207 OS=Pongo abelii GN=ZNF207 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.929e-29
Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:  172 WCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIP 396
            WC+YC+R+FDDEKIL QHQKAKHFKCH+CHKKL T  G+AIH +QVHKE +  VPNA PGR   ++EIYGM+GIP
Sbjct:   12 WCWYCNRDFDDEKILTQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIP 86
The following BLAST results are available for this feature:
BLAST of FC876545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZN207_HUMAN1.764e-2970.67Zinc finger protein 207 OS=Homo sapiens GN=ZNF207 ... [more]
ZN207_PONAB3.929e-2970.67Zinc finger protein 207 OS=Pongo abelii GN=ZNF207 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1AA12RM1 EHR Citrus clementina cDNA clone KN0AAN1AA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876545 ID=FC876545; Name=FC876545; organism=Citrus clementina; type=EST; length=809bp
GCACGAGGATACCGCGCAGAGATCGAGAGAGGGGAGAAACAGTAGGAAAC
CCTAATAAATCAATCGAGCGAGAACGAGAGTGATTTTGATAATTTTTTTT
TTAAGGCAAATAGAGAGAAACAGGGAAGGGCAAAGATGGGAAAGAAGAAG
AAGAGAGTATCGTCGAAGGTTTGGTGCTATTACTGCGACAGGGAATTCGA
TGACGAAAAGATTTTAGTACAACATCAGAAAGCTAAGCACTTCAAGTGCC
ACGTGTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATTCACGTC
CTTCAGGTTCACAAAGAGAATGTCACCAAAGTACCTAATGCAAAACCAGG
TCGAGAGTCGACCGACATTGAAATTTATGGAATGCAAGGAATACCACCTG
ATGTCTTAGCTGCTCATTATGGAGAAGAAGAAGAAGAAGTTCCATCTAAA
ATGGCCAAAGTGGATACTTCTTTCCCACAGCTGGTAGGTGGGGTGGTGCC
AGGACAATTGGGTGTCAGCTATCCTCCTCAATCAACTTTAGGCATGATGC
AGCCAATTTACAGTTCTGCAGTTCCCGTGCCTCCTGCTGGTTGGCCAGTG
CCTCCTCGTCCTCAACCCTGGTATCCACAGCATGCAGCAGTTTCAATTCC
CCCACCTGCTGCAGTGGGTTATGCTCAACAGCCTTTATTTCCTGTGCAAA
ATGTGAGGCCCCCTCTGGCATCGTCTACGTCACCTGCACTCCAACCTTCT
CCAGTAGTTCCTCCTGGAATGCCCTCGTCTACACCTCTTGTTACCGTATC
CCAACCCTT
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