FC876552

Overview
NameFC876552
Unique NameFC876552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length276
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10439 contig Ccv1_Contig10439:6..281. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876552 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 2.905e-39
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 1
Query:   10 RARIPLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLNMLEMDDEY 276
            RARI LINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVL MLEMDDEY
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEY 119          
BLAST of FC876552 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 2.905e-39
Identity = 79/89 (88.76%), Postives = 83/89 (93.26%), Query Frame = 1
Query:   10 RARIPLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLNMLEMDDEY 276
            RARI LINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVL MLEMDDEY
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEY 119          
BLAST of FC876552 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.082e-37
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 1
Query:   10 RARIPLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLNMLEMDDEY 276
            RARI LINQDKNKYNTPKYRFVVR +NKDI AQI+SA+I GD VLA+AY+HELP+YGLEVGLTNYAAAYCTGLLLARRVL MLEMD EY
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEY 119          
BLAST of FC876552 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.926e-36
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 1
Query:   10 RARIPLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLNMLEMDDEY 276
            RARI L NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EY
Sbjct:   32 RARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEY 120          
BLAST of FC876552 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 3.926e-36
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 1
Query:   10 RARIPLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLNMLEMDDEY 276
            RARI L NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EY
Sbjct:   32 RARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEY 120          
BLAST of FC876552 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.050e-33
Identity = 71/89 (79.78%), Postives = 75/89 (84.27%), Query Frame = 1
Query:   10 RARIPLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLNMLEMDDEY 276
            RARI L NQDKNKYNTPKYRFV   TNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EY
Sbjct:   35 RARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEY 120          
BLAST of FC876552 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.229e-31
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   10 RARIPLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLNMLEMDDEY 276
            RAR  L+ QDKNKYNTPKYR V+RFTN DII QI+ A I GD VL +AYAHELPRYG++VGLTNYAAAYCTGLLLARR+L  L + D+Y
Sbjct:   31 RARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKY 119          
BLAST of FC876552 vs. ExPASy Swiss-Prot
Match: RL5_STYCL (60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 6.486e-31
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 1
Query:   13 ARIPLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLNMLEMDDEY 276
            AR  L+ QDKNKYNTPKYR +VRFTNKDI+ QI  A I GD V+ AAYAHELPRYG++VGLTNYAAAYCTGLLL+RR+LN   +D+ Y
Sbjct:   32 ARKRLVVQDKNKYNTPKYRMIVRFTNKDIVCQIAYARIEGDVVICAAYAHELPRYGVKVGLTNYAAAYCTGLLLSRRLLNKFGLDEIY 119          
BLAST of FC876552 vs. ExPASy Swiss-Prot
Match: RL5_RAT (60S ribosomal protein L5 OS=Rattus norvegicus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 9.366e-30
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   13 ARIPLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLNMLEMDDEY 276
            AR  L+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+LN   MD  Y
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIY 119          
BLAST of FC876552 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 9.366e-30
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   13 ARIPLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLNMLEMDDEY 276
            AR  L+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+LN   MD  Y
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIY 119          
The following BLAST results are available for this feature:
BLAST of FC876552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL52_ARATH2.905e-3988.7660S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH2.905e-3988.7660S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL5_CUCSA2.082e-3785.3960S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL51_ORYSJ3.926e-3683.1560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI3.926e-3683.1560S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ9.050e-3379.7860S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_SUBDO2.229e-3173.0360S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_STYCL6.486e-3171.5960S ribosomal protein L5 OS=Styela clava GN=RPL5 P... [more]
RL5_RAT9.366e-3070.4560S ribosomal protein L5 OS=Rattus norvegicus GN=R... [more]
RL5_MOUSE9.366e-3070.4560S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AC03RM1 EHR Citrus clementina cDNA clone KN0AAN1AC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876552 ID=FC876552; Name=FC876552; organism=Citrus clementina; type=EST; length=276bp
GCACGAGGCAGAGCTAGAATTCCCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACCAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
ACATGCTTGAAATGGATGATGAGTAT
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