FC876554

Overview
NameFC876554
Unique NameFC876554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length441
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10387 contig Ccv1_Contig10387:1..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876554 vs. ExPASy Swiss-Prot
Match: TPK1_HUMAN (Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 49/152 (32.24%), Postives = 83/152 (54.61%), Query Frame = 3
Query:    3 GGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVYESHDQDATDLHKCVAYIRDCTPNL*KSNLR---ILVAGALGGRFDHDAGNINVLYRFSDI---QIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCG 440
            GGANR+YD              R  + P+ I GD DSIR EV ++YA+ G +++  + DQD TD  KC+  ++     + + +L+   I+  G L GRFD    ++N L++ + I    II++ ++  I LL +  +H +++ + +EG  CG
Sbjct:   47 GGANRLYDIT---------EGERESFLPEFINGDFDSIRPEVREYYATKGCELI-STPDQDHTDFTKCLKMLQ---KKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLL-QPGKHRLHVDTGMEGDWCG 184          
BLAST of FC876554 vs. ExPASy Swiss-Prot
Match: TPK1_MOUSE (Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 48/149 (32.21%), Postives = 76/149 (51.01%), Query Frame = 3
Query:    3 GGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVYESHDQDATDLHKCVAYIRDCTPNL*KSNLRILVAGALGGRFDHDAGNINVLYR---FSDIQIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCG 440
            GGAN +YD    L   E     R  + P+ + GD DSIR EV ++Y   G  ++  + DQD TD  KC+  ++            I+  G LGGRFD    ++N L++    + + II++  D  I LL +  +H +++ + +EG  CG
Sbjct:   47 GGANHLYD----LTEGE-----RESFLPEFVSGDFDSIRPEVKEYYTKKGCDLI-STPDQDHTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQKDSLIYLL-QPGKHRLHVDTGMEGSWCG 184          
BLAST of FC876554 vs. ExPASy Swiss-Prot
Match: TPK1_BOVIN (Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 44/149 (29.53%), Postives = 75/149 (50.34%), Query Frame = 3
Query:    3 GGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVYESHDQDATDLHKCVAYIRDCTPNL*KSNLRILVAGALGGRFDHDAGNINVLY---RFSDIQIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCG 440
            GGAN +YD              R  + P+ I GD DSIR EV + YA  G +++  + DQD TD  KC+  ++            I+  G L GRFD    +++ L+   + + + +I++ ++  I LL +  +H +++ + +EG  CG
Sbjct:   47 GGANHLYDVT---------EGERESFLPEFISGDFDSIRPEVREHYAIKGCEII-STPDQDHTDFTKCLEVLQKKIEEKDLQVDMIVTLGGLAGRFDQIMASVSTLFQAPQITSLPVIIIQEESLIYLL-QPGKHKLHVDTGMEGDWCG 184          
The following BLAST results are available for this feature:
BLAST of FC876554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TPK1_HUMAN8.148e-1432.24Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK... [more]
TPK1_MOUSE4.044e-1332.21Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk... [more]
TPK1_BOVIN2.007e-1229.53Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1AC07RM1 EHR Citrus clementina cDNA clone KN0AAN1AC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876554 ID=FC876554; Name=FC876554; organism=Citrus clementina; type=EST; length=441bp
ATGGAGGCGCTAACCGTGTCTATGATGAATTGCCTCAACTTTTTCCTCAT
GAAGATCCTTCTGATATTCGCCGCAGGTACAAGCCAGACCTCATTAAAGG
AGACATGGATTCAATCCGAAAAGAAGTAATGGATTTTTATGCAAGTTTGG
GAACCAAAGTGGTATATGAATCGCATGATCAGGACGCCACGGACCTACAT
AAATGTGTAGCATATATTCGCGACTGCACACCAAACTTATAGAAGTCGAA
TCTCCGCATTCTTGTTGCTGGGGCACTTGGTGGACGGTTTGACCATGATG
CTGGAAACATAAATGTTTTATATCGCTTCTCAGACATACAGATAATACTT
TTATCTGATGATTGCCATATCCAACTTCTCCCGAAAACTCACCGCCACGA
TATCTACATACAATCTTCTGTAGAGGGTCCACATTGTGGAC
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