FC876555

Overview
NameFC876555
Unique NameFC876555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length780
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10367 contig Ccv1_Contig10367:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876555 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.477e-33
Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYNTAVFYLRGPSARLNFPELIFQEDDLRHVSAAS--------IRKKATDFGANVYALQAALHAAXXXXXXXXXXXXXXIRLSEKPDLHQFPESSD 637
            Y+GIR RKWGKWVAEIREPNKRSR+WLGSYTT IAAARAY+ AVFYLRGPSARLNFP+L+ QE+D  H+SAA+        IR+KA + GA V AL A+   +                   KPDL+Q PES D
Sbjct:   31 YRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLLLQEED--HLSAATTADMPAALIREKAAEVGARVDALLASAAPSMAHSTPPVI----------KPDLNQIPESGD 152          
BLAST of FC876555 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.220e-32
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYNTAVFYLRGPSARLNFPELI----FQEDDLRHVSAASIRKKATDFGANVYALQAAL 535
            YKGIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAY+TAVFYLRGP+ARLNFPEL+    F ++D+   SAA+IRKKAT+ GA V AL  A+
Sbjct:   21 YKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELLPGEKFSDEDM---SAATIRKKATEVGAQVDALGTAV 113          
BLAST of FC876555 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.948e-30
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYNTAVFYLRGPSARLNFPELIFQEDDLRHVSAASIRKKATDFGANVYALQAALHAAXXXXXXXXXXXXXXIRLSEKPDLHQFPESSDED 643
            +KGIRMRKWGKWVAEIREPNKRSR+WLGSY+TP AAARAY+TAVFYLRGP+A LNFPEL+        +SAA+IRKKAT+ GA V A+ A +                   L E  DL++ P+  + D
Sbjct:   21 FKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELL-PCTSAEDMSAATIRKKATEVGAQVDAIGATVVQNNKRRRVFSQKRDFGGGLLELVDLNKLPDPENLD 147          
BLAST of FC876555 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.323e-30
Identity = 70/101 (69.31%), Postives = 78/101 (77.23%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYNTAVFYLRGPSARLNFPELIF----------QEDDLRHVSAASIRKKATDFGANVYALQAA 532
            YKGIRMRKWGKWVAEIREPNKRSRIWLGSY+TP AAARAY+TAVFYLRGPSARLNFPEL+             +    +SAA IR+KA + GA V AL+AA
Sbjct:   30 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAGVTVTGGGGGGVNGGGDMSAAYIRRKAAEVGAQVDALEAA 130          
BLAST of FC876555 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.323e-30
Identity = 78/142 (54.93%), Postives = 89/142 (62.68%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYNTAVFYLRGPSARLNFPELIF---------QEDDLRHVSAASIRKKATDFGANVYALQAALHAAXXXXXXXXXXXXXXIRLS-----EKPDLHQFPESSDED 643
            YKGIRMRKWGKWVAEIREPNKRSRIWLGSY TP AAARAY+TAVFYLRGPSARLNFPEL+          +  DL   SAA IR+KA + GA V AL A +                  R S     E+ DL++ P+  + D
Sbjct:   28 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELLAGLTVSNGGGRGGDL---SAAYIRRKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSGNGSLERVDLNKLPDPENSD 166          
BLAST of FC876555 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.674e-29
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYNTAVFYLRGPSARLNFPELIFQEDDLRH-----VSAASIRKKATDFGANVYA 520
            YKGIRMRKWGKWVAEIREPNKRSRIWLGSY T +AAARAY+TAVFYLRGPSARLNFPE +F++ +        +S   IRKKA + GA V A
Sbjct:   36 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVDA 127          
BLAST of FC876555 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.977e-18
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYNTAVFYLRGPSARLNFPELIFQEDDLRHVSAASIRKKATDF 502
            YKG+R RKWGKWV+EIR PN R RIWLGSY TP  AARA++ A++ LRG +A+ NFP+        R++S + IR+ A  F
Sbjct:   12 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVISGGRNLSRSEIREAAARF 92          
BLAST of FC876555 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.489e-18
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYNTAVFYLRGPSARLNFPEL------IFQEDDLRHVSAASIRKKA 493
            YKG+RMR WG WV EIR PN+++RIWLGSY+T  AAARAY+ A+  L+GP A LNFP +      +   D+   +S  SI+K A
Sbjct:   43 YKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNITTTSPFLMNIDEKTLLSPKSIQKVA 126          
BLAST of FC876555 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.109e-17
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYNTAVFYLRGPSARLNFPEL 436
            Y+G+R RKWGKWV+EIREP  ++RIWLGS+ TP  AA AY+ A F+ RG  ARLNFPEL
Sbjct:   24 YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPEL 82          
BLAST of FC876555 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.448e-17
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYNTAVFYLRGPSARLNFPELIFQ-----EDDLRHVSAASIRKKATDFGA 508
            ++G+RMR+WGKWV+EIREP K+SRIWLG+++TP  AARA++ A   ++G SA LNFPEL +        D + +  A+    A D+ A
Sbjct:   40 FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAVDWKA 127          
The following BLAST results are available for this feature:
BLAST of FC876555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
RAP21_ARATH5.477e-3358.21Ethylene-responsive transcription factor RAP2-1 OS... [more]
ERF10_ARATH1.220e-3273.96Ethylene-responsive transcription factor ERF010 OS... [more]
ERF11_ARATH1.948e-3056.25Ethylene-responsive transcription factor ERF011 OS... [more]
RA210_ARATH3.323e-3069.31Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF08_ARATH3.323e-3054.93Ethylene-responsive transcription factor ERF008 OS... [more]
RAP29_ARATH3.674e-2970.65Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF17_ARATH4.977e-1854.32Ethylene-responsive transcription factor ERF017 OS... [more]
ERF13_ARATH8.489e-1852.38Ethylene-responsive transcription factor ERF013 OS... [more]
ERF21_ARATH1.109e-1766.10Ethylene-responsive transcription factor ERF021 OS... [more]
ERF39_ARATH1.448e-1747.73Ethylene-responsive transcription factor ERF039 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AC08RM1 EHR Citrus clementina cDNA clone KN0AAN1AC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876555 ID=FC876555; Name=FC876555; organism=Citrus clementina; type=EST; length=780bp
GCACGAGGCGGCACGAGGCACATATATAAGTGACTTGTACAGCATCTGCG
GCAATAAAAGTGGAGTCGCCTTAATTATTTTTGGGTTGGGCATCGGTATG
TGTCCCTCAGAACTCACAACAAGAAGAAAACTTTGATTAATTATCTACGA
AAACGACATGGAAGGAGGCGGGTGCTGCAGCACTTCGACTTCAACGAAAA
GCCCAGAGAAGCGGAAGCCAAGGCAGCAGCGGCAACACCAACAGCAGCAG
GAAAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTCGC
TGAAATTAGAGAGCCTAACAAGAGATCCAGAATCTGGCTTGGTTCTTACA
CCACGCCTATAGCCGCCGCACGTGCCTACAACACGGCCGTCTTCTATCTC
CGGGGCCCTTCCGCTCGTCTTAACTTCCCCGAATTGATTTTCCAAGAAGA
CGATCTTCGACACGTTTCTGCCGCTTCAATACGCAAGAAAGCTACCGACT
TTGGCGCTAATGTCTACGCTTTACAAGCTGCTCTCCATGCTGCTAATTCA
GAATCTGAATCCAATTCCAATTCCAATTTCAATTCTATTCGATTGTCCGA
GAAGCCTGATTTACACCAGTTTCCAGAGAGTTCTGATGAAGATTGATATC
ACAAAATACTTGCGAGCTCACAATTACCTACCCTAGCCTTTCCACGTTTA
CGTACTGTTTTATTCGCATCATCCATTTCACCTTTGAAAACGTACGGAAT
CACAAGGAATCTGTTTCATATATTTAAATT
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