FC876576

Overview
NameFC876576
Unique NameFC876576
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10439 contig Ccv1_Contig10439:6..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876576 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.042e-103
Identity = 183/223 (82.06%), Postives = 202/223 (90.58%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEISLTNYAAAYCTGLLLARRVLKMLEMDDEYDGNVEATGEDYSVEPTDTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLYIPHTDKRFAGFSNDGKQLDADVHRKYIYGGHVAAYMSTLMEDEPDNYHSHFTEYIKKGIDADGL*ALYKKVQAAIHAYPTRK 678
            RARIRLINQDKNKYNTPKYRFVVR +NKDI AQI+SA+I GD VLA+AY+HELP+YGLE+ LTNYAAAYCTGLLLARRVLKMLEMD EY+GNVEATGEDYSVEP DTRRPFRALLDVGLI+TTTGNRVFGALKGALDGGL IPH+DKRFAG++ +G+QLD +VHRKYI+GGHVAAYM TLMEDEP+ Y SHF+EYIKKGI+AD L  LYKKV AAI A P  K
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAK 253          
BLAST of FC876576 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 7.013e-100
Identity = 175/221 (79.19%), Postives = 195/221 (88.24%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEISLTNYAAAYCTGLLLARRVLKMLEMDDEYDGNVEATGEDYSVEPTDTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLYIPHTDKRFAGFSNDGKQLDADVHRKYIYGGHVAAYMSTLMEDEPDNYHSHFTEYIKKGIDADGL*ALYKKVQAAIHAYPT 672
            RARIRL NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLE+ LTNYAAAYCTGLLLARRVLK+  +D EY+GN+EATGEDY VEP D RRPFRALLDVGLI+TTTGNRVFGALKGALDGGL IPH+DKRFAGF  D KQLD+D+HRKYIYGGHVA YM ++ E+EP+ + +HF+EY+KKGIDADG+ ALYKKV AAI A PT
Sbjct:   32 RARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPT 252          
BLAST of FC876576 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 363.229 bits (931), Expect = 7.013e-100
Identity = 175/221 (79.19%), Postives = 195/221 (88.24%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEISLTNYAAAYCTGLLLARRVLKMLEMDDEYDGNVEATGEDYSVEPTDTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLYIPHTDKRFAGFSNDGKQLDADVHRKYIYGGHVAAYMSTLMEDEPDNYHSHFTEYIKKGIDADGL*ALYKKVQAAIHAYPT 672
            RARIRL NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLE+ LTNYAAAYCTGLLLARRVLK+  +D EY+GN+EATGEDY VEP D RRPFRALLDVGLI+TTTGNRVFGALKGALDGGL IPH+DKRFAGF  D KQLD+D+HRKYIYGGHVA YM ++ E+EP+ + +HF+EY+KKGIDADG+ ALYKKV AAI A PT
Sbjct:   32 RARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPT 252          
BLAST of FC876576 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 362.844 bits (930), Expect = 9.159e-100
Identity = 175/223 (78.48%), Postives = 197/223 (88.34%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEISLTNYAAAYCTGLLLARRVLKMLEMDDEYDGNVEATGEDYSVEPTDTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLYIPHTDKRFAGFSNDGKQLDADVHRKYIYGGHVAAYMSTLMEDEPDNYHSHFTEYIKKGIDADGL*ALYKKVQAAIHAYPTRK 678
            RARIRLINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL + LTNYAAAYCTGLLLARRVLKMLEMDDEY+GNVEATGED+SVEPTD+RRPFRALLDVGLI+TTTGNRVFGALKGALDGGL IPH+DKRFAGF  + KQLDA++HR YIYGGHV+ YM  L EDEP+   +HF+ YIKKG++A+ +  +YKKV AAI A P  K
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHK 253          
BLAST of FC876576 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 362.459 bits (929), Expect = 1.196e-99
Identity = 176/223 (78.92%), Postives = 197/223 (88.34%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEISLTNYAAAYCTGLLLARRVLKMLEMDDEYDGNVEATGEDYSVEPTDTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLYIPHTDKRFAGFSNDGKQLDADVHRKYIYGGHVAAYMSTLMEDEPDNYHSHFTEYIKKGIDADGL*ALYKKVQAAIHAYPTRK 678
            RARIRLINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL + LTNYAAAYCTGLLLARRVLKMLEMDDEY+GNVEATGED+SVEPTD+RRPFRALLDVGLI+TTTGNRVFGALKGALDGGL IPH+DKRFAGF  + KQLDA++HR YIYGGHV+ YM  L EDEP+   +HF+ YIKKG++A+ +  LYKKV AAI A P  K
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPK 253          
BLAST of FC876576 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.369e-95
Identity = 171/221 (77.38%), Postives = 191/221 (86.43%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEISLTNYAAAYCTGLLLARRVLKMLEMDDEYDGNVEATGEDYSVEPTDTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLYIPHTDKRFAGFSNDGKQLDADVHRKYIYGGHVAAYMSTLMEDEPDNYHSHFTEYIKKGIDADGL*ALYKKVQAAIHAYPT 672
            RARIRL NQDKNKYNTPKYRFV   TNKDI AQIV A I GD V+AAAY+HELPRYGLE+ LTNYAAAYCTGLLLARRVL +  +D EY+GNVEATGEDY VEP D RRPFRALLDVGLI+TTTGNRVFGALKGALDGGL IPH+DKRFAGF  D KQLD+D+HRKYIYGGHVA YM ++ E+EP+ + +HF+EY+KKGIDADG+ +LYKKV AAI A PT
Sbjct:   35 RARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPT 252          
BLAST of FC876576 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.737e-72
Identity = 131/224 (58.48%), Postives = 166/224 (74.11%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEISLTNYAAAYCTGLLLARRVLKMLEMDDEYDGNVEATGEDYSVEPT-DTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLYIPHTDKRFAGFSNDGKQLDADVHRKYIYGGHVAAYMSTLMEDEPDNYHSHFTEYIKKGIDADGL*ALYKKVQAAIHAYPTRK 678
            RAR RL+ QDKNKYNTPKYR V+RFTN DII QI+ A I GD VL +AYAHELPRYG+++ LTNYAAAYCTGLLLARR+L  L + D+Y G  +  GED++VE   D  RPFRA LDVGL +TTTGNRVF A+KGA+DGG+ IPH+  RF G+  +  QL+AD  R+YI+GGHV+ YM  L E++ + Y +HF+ +IK+GI AD +  +Y+   A I A P  +
Sbjct:   31 RARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEEDEEKYKAHFSRFIKEGITADSMEQMYRDAHAKIRANPAHE 254          
BLAST of FC876576 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 8.933e-71
Identity = 130/223 (58.30%), Postives = 167/223 (74.89%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEISLTNYAAAYCTGLLLARRVLKMLEMDDEYDGNVEATGEDYSVEPT-DTRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLYIPHTDKRFAGFSNDGKQLDADVHRKYIYGGHVAAYMSTLMEDEPDNYHSHFTEYIKKGIDADGL*ALYKKVQAAIHAYPTRK 678
            AR RLI QDKNKYNTPKYR VVRF+N+DI  Q+  + I GD +L AAYAHELP+YG+++ LTNYAAAYCTGLLLAR++L  L +D  Y G+ E TGE+++V+P  D    FR  LDVGL++TTTG RVFGA+KGA+DGGL I H+ KRF GF ++ K+ +ADVHR++I+G HVA YM  L E++ + Y   F++YIK G++AD +  LYKK   AI A P RK
Sbjct:   32 ARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYIKLGLNADAIEGLYKKAHEAIRANPARK 254          
BLAST of FC876576 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.167e-70
Identity = 127/222 (57.21%), Postives = 164/222 (73.87%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEISLTNYAAAYCTGLLLARRVLKMLEMDDEYDGNVEATGEDYSVEPTDTRR-PFRALLDVGLIKTTTGNRVFGALKGALDGGLYIPHTDKRFAGFSNDGKQLDADVHRKYIYGGHVAAYMSTLMEDEPDNYHSHFTEYIKKGIDADGL*ALYKKVQAAIHAYPTR 675
            AR RL  QDK+KYNTPKYR +VR +NKDI  QI  + I GD ++ AAY+HELP+YG+++ LTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE  D     FR  LD GL++TTTG R+FGA+KGA+DGGL IPH+ KRF G+ N+ K  +ADVHR++I+  H+A YM TL E+EP+N+   F++YIK GI ADG+  +YKK   AI A P R
Sbjct:   32 ARKRLTVQDKSKYNTPKYRLIVRLSNKDITCQIAYSRIEGDRIVCAAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDR 253          
BLAST of FC876576 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 9.876e-70
Identity = 128/223 (57.40%), Postives = 163/223 (73.09%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEISLTNYAAAYCTGLLLARRVLKMLEMDDEYDGNVEATGEDYSVEPTDTR-RPFRALLDVGLIKTTTGNRVFGALKGALDGGLYIPHTDKRFAGFSNDGKQLDADVHRKYIYGGHVAAYMSTLMEDEPDNYHSHFTEYIKKGIDADGL*ALYKKVQAAIHAYPTRK 678
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG+++ LTNYAAAYCTGLLLARR+L    +D  Y+G VE TG++Y+VE  D +   F   LD GL +TTTGN+VFGALKGA+DGGL IPH+ KRF G+ ++ K+ +A+VHRK+I G +VA YM  LME++ D Y   F++YIK  I  DG+  +YKK  AAI   P  +
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNPVHE 254          
The following BLAST results are available for this feature:
BLAST of FC876576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL5_CUCSA3.042e-10382.0660S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL51_ORYSJ7.013e-10079.1960S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI7.013e-10079.1960S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ARATH9.159e-10078.4860S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH1.196e-9978.9260S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL52_ORYSJ1.369e-9577.3860S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_SUBDO4.737e-7258.4860S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_HELAN8.933e-7158.3060S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]
RL5_LYSTE1.167e-7057.2160S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_CHICK9.876e-7057.4060S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AD10RM1 EHR Citrus clementina cDNA clone KN0AAN1AD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876576 ID=FC876576; Name=FC876576; organism=Citrus clementina; type=EST; length=679bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAATAAGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGATGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAACTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAGATGGTGGATTGTACATTCCTCATACTGACAAG
AGGTTTGCTGGTTTTTCGAATGATGGCAAGCAGCTGGATGCTGACGTTCA
CCGCAAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGA
TGGAGGATGAGCCAGATAACTATCACTCTCACTTCACCGAATACATCAAG
AAAGGAATTGATGCTGATGGCTTGTAGGCACTGTACAAGAAGGTTCAGGC
TGCCATTCATGCATATCCTACTAGGAAGA
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