FC876584

Overview
NameFC876584
Unique NameFC876584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14362 contig Ccv1_Contig14362:47..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876584 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.253e-27
Identity = 85/190 (44.74%), Postives = 101/190 (53.16%), Query Frame = 2 
Query:  104 DPDFSGS--ARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------VEITSGDDIALV--DGLKN-VQLEALADLKNEASFLSSDGSLAIHAGERLGRGIITDAITTPVENTSAYFFKKTAE 598
            DPD  GS      + R+ A+  I +S    +G+SS I RFPPNFVRQLS KARRNCSNIGVAQI                                                  V + S D+  +V  +G++  +    L D K+  SFLSSDGSL +HAGERLGRGI+TDAITTPV NTSAYFFKKTAE
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQIVAAKWSNNPSSALPSAAAAAATSSASAVSSAASAAAASSAAAAPVAAAPPVVLKSVDEEVVVAEEGIREKIGSVQLTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAE 212
The following BLAST results are available for this feature:
BLAST of FC876584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH1.253e-2744.74Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2DB08RM1 EHR Citrus clementina cDNA clone KN0AAN2DB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876584 ID=FC876584; Name=FC876584; organism=Citrus clementina; type=EST; length=600bp
CAAAGCCGCCGTTCAATACGACGTCGTAATGGCCGTGTCCTCATGTTCGA
GTCAAAAAATTTTGTCCTTCTCTTCTTCATGTTCGTCTTTTGAGTGCCGG
TCCGATCCCGACTTCTCGGGCTCCGCTCGGTTTGATAAACCGAGGATCTC
GGCGGCGCGAGTCATTGGAGCCTCGACGGCGTCGTTTAGCGGCGTGTCGT
CTCTGATTTTCAGGTTTCCGCCGAACTTCGTACGCCAGCTTAGCACGAAG
GCCAGGAGGAACTGCAGCAACATCGGCGTGGCGCAAATCGTGGCGGCTTC
GTGGTCGAACAGTGTGGGTTCCGGCTCTAACTCGGCGGCGGCTACAGCCG
CTTCCGCTGCCCCGGCCCCGCCCGCCCCCGTCGAGATTACGAGCGGCGAT
GACATCGCGCTGGTTGACGGATTGAAAAATGTACAGCTGGAAGCCCTCGC
TGATTTGAAAAACGAGGCTTCGTTTTTGAGCTCCGATGGGAGCCTTGCAA
TTCATGCCGGTGAAAGATTAGGTCGTGGTATAATAACAGATGCAATTACT
ACCCCAGTGGAGAATACTTCTGCGTACTTCTTTAAGAAAACTGCTGAGCT
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