FC876589

Overview
NameFC876589
Unique NameFC876589
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876589 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.904e-30
Identity = 67/99 (67.68%), Postives = 73/99 (73.74%), Query Frame = 3
Query:   15 RKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFHLYESGIFTGRCGTSLDHGVTAVEYDT*NAADY*IVKNS*GNSWEHGVNLTSELNV 311
            RKNAKVVTID YEDV  N E +LQKAVANQPVSVAIE GG AF LY SGIFTG+CGT+LDHGV AV Y T N  DY IV+NS G SW     +  E N+
Sbjct:  229 RKNAKVVTIDSYEDVTPNSETSLQKAVANQPVSVAIEAGGRAFQLYSSGIFTGKCGTALDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNI 327          
BLAST of FC876589 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.234e-29
Identity = 64/99 (64.65%), Postives = 74/99 (74.75%), Query Frame = 3
Query:   15 RKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFHLYESGIFTGRCGTSLDHGVTAVEYDT*NAADY*IVKNS*GNSWEHGVNLTSELNV 311
            R+NAKVV+ID +EDVP NDEK+LQKAVA+QPVSVAIE GG  F LY SG+F+GRCGTSLDHGV AV Y T N  DY IV+NS G  W     +  E N+
Sbjct:  242 RENAKVVSIDGFEDVPQNDEKSLQKAVAHQPVSVAIEAGGREFQLYHSGVFSGRCGTSLDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNI 340          
BLAST of FC876589 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.999e-29
Identity = 63/100 (63.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:   15 RKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFHLYESGIFTGRCGTSLDHGVTAVEYDT*NAADY*IVKNS*GNSWEHGVNLTSELNVA 314
            RKNAKVVTID YEDVP   E++L+KAVA+QP+S+AIE GG AF LY+SGIF G CGT LDHGV AV Y T N  DY IV+NS G SW     L    N+A
Sbjct:  237 RKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGIFDGSCGTQLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIA 336          
BLAST of FC876589 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.155e-27
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 3
Query:   12 YRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFHLYESGIFTGRCGTSLDHGVTAVEYDT*NAADY*IVKNS*GNSWEHGVNLTSELNVA 314
            YRKNAKVV ID YEDVP+N+EKALQKAVA+QPVS+A+E GG  F  Y+SGIFTG+CGT++DHGV    Y T N  DY IV+NS G +      L  + NV+
Sbjct:  117 YRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIALEAGGRDFQHYKSGIFTGKCGTAVDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVS 217          
BLAST of FC876589 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.178e-26
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 3
Query:   18 KNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFHLYESGIFTGRCGTSLDHGVTAVEYDT*NAADY*IVKNS*GNSWEHGVNLTSELNVADR 320
            KN++VVTID YEDVP  DE AL++AV+ QPVSVAI+ GG AF  Y+SGIFTG+CGT++DH V AV Y + N  DY IV+NS G  W     +  E NVA +
Sbjct:  201 KNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVAIDAGGRAFQHYQSGIFTGKCGTNMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVASK 301          
BLAST of FC876589 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.146e-25
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 3
Query:    9 TYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFHLYESGIFTGRCGTSLDHGVTAVEYDT*NAADY*IVKNS*GNSWEHGVNLTSELNVA 314
            ++ KN++VV+ID YEDVP  DE AL+KA++ QPVSVAIE GG  F  Y+SGIFTG CGT+LDH V AV Y + N  DY IV+NS G  W     +  E N+A
Sbjct:  243 SFLKNSRVVSIDGYEDVPTKDETALKKAISYQPVSVAIEAGGRIFQHYQSGIFTGSCGTNLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLA 344          
BLAST of FC876589 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.366e-25
Identity = 59/104 (56.73%), Postives = 72/104 (69.23%), Query Frame = 3
Query:   15 RKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFHLYESGIFTGRCGTSLDHGVTAVEY--DT*NAADY*IVKNS*GNSWEHGVNLTSELNVADR 320
            +++ KVV+ID +EDVP NDE +LQKAVA+QPVSVAI+ GG  F LY+SG+FTGRCGT+LDHGV AV Y  D    A Y  V+NS G  W     +  E NV  R
Sbjct:  257 KRSRKVVSIDGFEDVPENDELSLQKAVAHQPVSVAIDAGGREFQLYDSGVFTGRCGTNLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR 360          
BLAST of FC876589 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.542e-24
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 3
Query:   21 NAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFHLYESGIFTGRCGTSLDHGVTAVEYDT*NAADY*IVKNS*GNSWEHGVNLTSELNVAD 317
            N +VVTID YEDVP +DEK+L+KAVA+QPVSVAIE    AF LY+SG+ TG CG SLDHGV  V Y + +  DY I++NS G +W     +  + N+ D
Sbjct:  235 NTRVVTIDGYEDVPRDDEKSLKKAVAHQPVSVAIEASSQAFQLYKSGVMTGTCGISLDHGVVVVGYGSTSGEDYWIIRNSWGLNWGDSGYVKLQRNIDD 333          
BLAST of FC876589 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.553e-22
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 3
Query:   21 NAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFHLYESGIFTGRCGTSLDHGVTAVEYDT*NAADY*IVKNS*GNSWEHGVNLTSELNV 311
            NA VV+ID YE+VP ++E++LQKAVANQPVSV ++  G  F LY SGIFTG C  S +H +T V Y T N  D+ IVKNS G +W     + +E N+
Sbjct:  103 NAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNI 199          
BLAST of FC876589 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.471e-22
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 3
Query:   21 NAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFHLYESGIFTGRCGTSLDHGVTAVEYD-T*NAADY*IVKNS*GNSWEHGVNLTSELNVADR 320
            N+ VV+ID ++DVP N+E AL +AVANQP+SV+IE  G  F  Y  G+FTGRCGT LDHGV  V Y  T +   Y IVKNS G  W     +  +  ++D+
Sbjct:  231 NSPVVSIDGHQDVPANNENALMQAVANQPISVSIEASGYGFQFYSEGVFTGRCGTELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK 331          
The following BLAST results are available for this feature:
BLAST of FC876589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ORYA_ORYSJ1.904e-3067.68Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
ORYB_ORYSJ1.234e-2964.65Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
RD21A_ARATH7.999e-2963.00Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC1.155e-2760.40Low-temperature-induced cysteine proteinase (Fragm... [more]
CYSP4_BRANA2.178e-2657.43Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
GCP1_ARATH3.146e-2555.88Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP1_ORYSJ5.366e-2556.73Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CPR1_ARATH4.542e-2454.55Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
CPGP2_ZINOF5.553e-2252.58Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CYSP_HEMSP9.471e-2249.50Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1AE07RM1 EHR Citrus clementina cDNA clone KN0AAN1AE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876589 ID=FC876589; Name=FC876589; organism=Citrus clementina; type=EST; length=361bp
GCACGAGGACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTAT
GAAGATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAA
TCAACCCGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCACTTAT
ATGAATCGGGTATATTTACCGGAAGATGTGGGACATCTCTGGACCATGGT
GTTACTGCTGTTGAATATGACACATAAAATGCAGCTGATTACTGAATTGT
GAAAAATTCATGAGGCAATAGCTGGGAACACGGAGTCAATCTAACCAGTG
AACTTAACGTCGCAGACAGACACACAGAAGAATAAGAAATCGACAGGTAA
GCCTGATGCCG
back to top