FC876606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 1.565e-47 Identity = 92/116 (79.31%), Postives = 105/116 (90.52%), Query Frame = 1 Query: 379 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726 E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRARTGQGKTLAFVLPILESL NGP K+ +K GYGR+PSVLVLLPT+ELAKQV DFD YGG++GL+SC Sbjct: 91 EVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSC 206
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42 Identity = 85/112 (75.89%), Postives = 96/112 (85.71%), Query Frame = 1 Query: 391 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726 PNA++ FRIS LREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPILESL NG KAS++T YGR P+VLVLLPT+ELAKQVH DF YG GL++C Sbjct: 114 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSAC 225
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 9.828e-42 Identity = 85/116 (73.28%), Postives = 100/116 (86.21%), Query Frame = 1 Query: 379 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726 E+E PN++S FRIS PL++ L SKGI++LFPIQAMTFD V+DG DLVGRARTGQGKTLAFVLPI+ESL NG TK +++G+GR PSVLVLLPT+ELA QV DF VYGGAVGLT+C Sbjct: 102 EAEDPNSLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTAC 217
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18 Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 1 Query: 397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690 A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E L G + + GRAP VLVL PT+ELA QV +DF Sbjct: 183 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDF 276
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18 Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 1 Query: 397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690 A S F IS + LK++G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E L G + + GRAP VLVL PT+ELA QV +DF Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDF 352
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18 Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 1 Query: 397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690 A+S IS + + L SKGIE LFPIQ + ++G D++GRARTG GKTLAF +PI++ + K + K G GR P LVL PT+ELA+QV ++F Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI----IKYNAKHGRGRNPLCLVLAPTRELARQVEKEF 198
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5) HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18 Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1 Query: 367 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690 QE + A S F IS + LK +G+ LFPIQA TF V G DL+ +ARTG GKT +F +P++E L +G + K+ GRAP VLVL PT+ELA QV +DF Sbjct: 177 QEIPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDF 280
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17 Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 1 Query: 397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690 A++ IS + + LK +GIE LFPIQ + ++G D++GRARTG GKTLAF +PI++ + K + K G G+ P LVL PT+ELA+QV ++F Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI----IKFNAKHGRGKNPQCLVLAPTRELARQVEKEF 210
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17 Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 400 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFD---------VYGG 705 V+R IS + E+L ++GI LFPIQ D + G D++GRARTG GKTLAF +PI++ + + ++K G GR P ++L PT+ELA+QV ++F VYGG Sbjct: 86 VARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRI----LRHNEKNGSGRNPLAIILAPTRELARQVEKEFKESAPLDSLCVYGG 192
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16 Identity = 49/119 (41.18%), Postives = 70/119 (58.82%), Query Frame = 1 Query: 376 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFD---------VYGG 705 G +E V++ IS + +L S+GI LFPIQ + + G D+VGRA+TG GKTLAF +PIL+++ + ++K G+ P +VL PT+ELAKQV +F VYGG Sbjct: 92 GGAEEGLEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAI----IRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSSNVETICVYGG 206 The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bpback to top |