FC876606

Overview
NameFC876606
Unique NameFC876606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876606_ssr319 microsatellite FC876606_ssr319:319..330. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.565e-47
Identity = 92/116 (79.31%), Postives = 105/116 (90.52%), Query Frame = 1
Query:  379 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726
            E ++PNAVS+FRIS PLREKLK+ GIE+LFPIQA TFDMVLDG+DLVGRARTGQGKTLAFVLPILESL NGP K+ +K GYGR+PSVLVLLPT+ELAKQV  DFD YGG++GL+SC
Sbjct:   91 EVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSC 206          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 85/112 (75.89%), Postives = 96/112 (85.71%), Query Frame = 1
Query:  391 PNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726
            PNA++ FRIS  LREKLKSKGI++LFPIQA TFD+VLDG DLVGRARTGQGKTLAFVLPILESL NG  KAS++T YGR P+VLVLLPT+ELAKQVH DF  YG   GL++C
Sbjct:  114 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSAC 225          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.828e-42
Identity = 85/116 (73.28%), Postives = 100/116 (86.21%), Query Frame = 1
Query:  379 ESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726
            E+E PN++S FRIS PL++ L SKGI++LFPIQAMTFD V+DG DLVGRARTGQGKTLAFVLPI+ESL NG TK  +++G+GR PSVLVLLPT+ELA QV  DF VYGGAVGLT+C
Sbjct:  102 EAEDPNSLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTAC 217          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690
            A S F IS    + LK++G+  LFPIQA TF  V  G DL+ +ARTG GKT +F +P++E L  G  +  +    GRAP VLVL PT+ELA QV +DF
Sbjct:  183 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDF 276          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690
            A S F IS    + LK++G+  LFPIQA TF  V  G DL+ +ARTG GKT +F +P++E L  G  +  +    GRAP VLVL PT+ELA QV +DF
Sbjct:  259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDF 352          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18
Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690
            A+S   IS  + + L SKGIE LFPIQ    +  ++G D++GRARTG GKTLAF +PI++ +     K + K G GR P  LVL PT+ELA+QV ++F
Sbjct:  105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI----IKYNAKHGRGRNPLCLVLAPTRELARQVEKEF 198          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  367 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690
            QE    +   A S F IS    + LK +G+  LFPIQA TF  V  G DL+ +ARTG GKT +F +P++E L +G  +  K+   GRAP VLVL PT+ELA QV +DF
Sbjct:  177 QEIPVEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDF 280          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690
            A++   IS  + + LK +GIE LFPIQ    +  ++G D++GRARTG GKTLAF +PI++ +     K + K G G+ P  LVL PT+ELA+QV ++F
Sbjct:  117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI----IKFNAKHGRGKNPQCLVLAPTRELARQVEKEF 210          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  400 VSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFD---------VYGG 705
            V+R  IS  + E+L ++GI  LFPIQ    D  + G D++GRARTG GKTLAF +PI++ +     + ++K G GR P  ++L PT+ELA+QV ++F          VYGG
Sbjct:   86 VARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRI----LRHNEKNGSGRNPLAIILAPTRELARQVEKEFKESAPLDSLCVYGG 192          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 49/119 (41.18%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  376 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFD---------VYGG 705
            G +E    V++  IS  +  +L S+GI  LFPIQ    +  + G D+VGRA+TG GKTLAF +PIL+++     + ++K   G+ P  +VL PT+ELAKQV  +F          VYGG
Sbjct:   92 GGAEEGLEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAI----IRHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSSNVETICVYGG 206          
The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RH7_ARATH1.565e-4779.31DEAD-box ATP-dependent RNA helicase 7 OS=Arabidops... [more]
RH7_ORYSJ5.762e-4275.89DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sat... [more]
RH7_SPIOL9.828e-4273.28DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia ... [more]
DDX21_RAT3.401e-1850.00Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=D... [more]
DDX21_MOUSE3.401e-1850.00Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 ... [more]
RH53_ARATH4.442e-1848.98DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
DDX21_HUMAN7.577e-1848.15Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 ... [more]
RH9_ARATH3.761e-1745.92DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
RH53_ORYSJ3.761e-1743.24DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
RH9_ORYSJ1.866e-1641.18DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF08RM1 EHR Citrus clementina cDNA clone KN0AAN1AF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bp
GCACGAGGAGACGCCCTCTGCTGTTTCTTTGTATCTCATTTTAATTTTTG
TAACTTAACATAACCATTCATGCCTTCGATCGCTTTGTTTGACGGAAAAG
AAGTGAAAGACGAGAAGAAGATGAATAAGAAAATGGCTCTCAAGGACTTC
GAAGAAACGGAGGCGGCGTTAACTGAGAAGAGTTCGGATAAGAAGAAGAG
CAAGAAGAAGGAGAGTAGTAAGAAGCGGAAGGAATCGGAGATTGAGGAGG
AGGAAGAGAGAAGCGAAACGAGCTCGGAGTTAGGCGAGCCGGTGAATTTG
AAATCGGAGAAGGAGAAAAAGAAGAAGAAGAAAGCGAAAGTTGAGCCTGA
GGCTGGAGTGGAAGAGCAGGAGAGGGGTGAAAGCGAACATCCGAATGCGG
TTTCGAGGTTTAGAATATCGGTGCCATTAAGGGAAAAGCTCAAGTCCAAG
GGGATTGAGTCTTTGTTTCCTATTCAAGCTATGACTTTTGATATGGTTCT
TGATGGCTCTGATTTAGTCGGACGTGCACGGACCGGTCAGGGTAAAACTT
TAGCCTTTGTGTTGCCAATTTTAGAGTCTCTAACGAATGGGCCAACAAAA
GCGTCCAAGAAGACTGGATATGGCAGGGCTCCAAGTGTTTTGGTACTTTT
GCCTACTAAGGAATTGGCCAAACAGGTTCATGAGGACTTTGATGTCTATG
GCGGGGCAGTGGGACTGACCTCATGTTG
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