FC876613

Overview
NameFC876613
Unique NameFC876613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length888
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876613_ssr853 microsatellite FC876613_ssr853:853..862. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10397 contig Ccv1_Contig10397:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.715e-55
Identity = 109/208 (52.40%), Postives = 143/208 (68.75%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKA-AKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELL 672
            MAE  VKLLG+W SPF+ RV+WALK+KGV YEY+EE+  NKS LLL+ NPVYKK+PVL+HNGKP+ ES++I+EYIDE ++   +LP+DPY+RA ARFWAKF D+K V  V+  F  KGEEQEK   +  E LK+L+  L+ K FF GDK GF DIA   +G W  + EE  G  L+ +E  P  + W + ++    +   +P   ELL
Sbjct:    1 MAE--VKLLGFWYSPFSHRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPVYKKVPVLIHNGKPIVESMIILEYIDETFEGPSILPKDPYDRALARFWAKFLDDK-VAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELL 205          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.852e-55
Identity = 110/208 (52.88%), Postives = 144/208 (69.23%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKA-AKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELL 672
            MAE  VKLLG+W SPF  RV+WALKLKGV YEY+EE+  NKS LLL+ NPV+KK+PVL+HNGKP+ ES++I+EYIDE ++   +LP+DPY+RA ARFW+KF  +K V  V+  F  KGEEQEK   +  E LK+L+  L+ K FF GDK GF DIA   +G W  + EE  GV L+ +E  P  + W + ++    +K  +PS  ELL
Sbjct:    1 MAE--VKLLGFWYSPFTHRVEWALKLKGVKYEYIEEDRDNKSSLLLQSNPVHKKVPVLIHNGKPIVESMVILEYIDETFEGPSILPKDPYDRALARFWSKFLGDK-VAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELL 205          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.276e-55
Identity = 109/208 (52.40%), Postives = 143/208 (68.75%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEK-AAKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELL 672
            MAE  VKLLG+W SPF+ RV+WALK+KGV YEY+EE+  NKS LLL+ NP++KK+PVL+HNGK + ES++I+EYIDE ++   +LP+DPY+RA ARFWAKF D+K VP V+  F  KGEEQEK   +  E LK+L+  L+ K FF GDK GF DIA   +  W  + EE +GV L+ +E  P    W   ++    IK  +P   ELL
Sbjct:    1 MAE--VKLLGFWYSPFSRRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPIHKKVPVLIHNGKRIVESMVILEYIDETFEGPSILPKDPYDRALARFWAKFLDDK-VPAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELL 205          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.408e-54
Identity = 110/220 (50.00%), Postives = 144/220 (65.45%), Query Frame = 1
Query:   58 EESVKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEV-MGAFASKGEEQEK-AAKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEHNKGFRKILTGS 711
            +E VKLLG   SPF  RV+ ALKLKGV Y+++EENL NKS LLL+YNPV+KK+PV VHN +P+AESL+I+EYIDE WK NP+LP DPY+RA ARFW+KF D+K V  V    F    +E+EK   +  E L+ LE  L+ K FFGG++ G +DIA  +I  W  I +EIAG+ L  +E  P+L  W   FL  P +   +P    L  + K   + L+ S
Sbjct:    5 QEDVKLLGIVGSPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNNPILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKARYESLSAS 224          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.615e-50
Identity = 109/222 (49.10%), Postives = 139/222 (62.61%), Query Frame = 1
Query:   52 MAE-ESVKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKC--VPEVMGAFASKGEEQEKAAKARENLKMLERALEGKPFFGGDKIGFLDIAV----------GWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEH 678
            MAE E VKLLG WASPF+ RV+ ALKLKG+ YEYVEE L NKSPLLL  NP++KK+PVLVHNGK + ES +I+EYIDE W QNP+LP+DPYER+ ARF+AK  DE+   V  +  A A +   +  A + RE +  LE+ L GK +FGG  +GFLD             GW GI         G+ +I  E  P    W+ N  +V ++K C+P   E +EH
Sbjct:    1 MAEKEEVKLLGIWASPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQNPILPQDPYERSKARFFAKLVDEQIMNVGFISMARADEKGREVLAEQVRELIMYLEKELVGKDYFGGKTVGFLDFVAGSLIPFCLERGWEGI---------GLEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREEHVEH 213          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.974e-48
Identity = 101/191 (52.88%), Postives = 137/191 (71.73%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKA-AKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNF 621
            MAE  VKLLG   SPF+ RV+WALK+KGV YE++EE+L NKSPLLL+ NP++KKIPVL+HNGK + ES++I+EYIDEA++   +LP+DPY+RA ARFWAK+ ++K    V  +F SKGEEQEKA  +A E LK+L+   + K  F GDK GF DI      ++  I+EE++G+ L  +E  P   AW + +
Sbjct:    1 MAE--VKLLGLRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPSILPKDPYDRALARFWAKYVEDKGA-AVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFVGDKFGFADIVANGAALYLGILEEVSGIVLATSEKFPNFCAWRDEY 188          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.950e-44
Identity = 100/218 (45.87%), Postives = 133/218 (61.01%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNP--LLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKAAK-ARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEHNKGFRK 696
            MA E V LL +W S F +R++ AL  K + YEY EE+L NKSPLLL+ NP++KKIPVL+HNGKP+ ES++ +EYI+E WK     LLP DPY+RA ARFWA + D+K        + +KGEEQE A K   E LK+LE AL  KP+FGG+  GF+DIA+     W    E     S  +AE  P   AW    ++   +   +P   ++LE  K  R+
Sbjct:    1 MANEEVILLDFWPSMFGMRLRIALAEKEIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFGNFS-TEAE-CPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQ 216          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.853e-44
Identity = 99/218 (45.41%), Postives = 134/218 (61.47%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQN--PLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKAAK-ARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEHNKGFRK 696
            MA E V LL +W S F +R++ AL  K + YEY +E+L NKSPLLL+ NP++KKIPVL+HNGKP+ ES++ +EYI+E WK     LLP DPY+RA ARFWA + D+K        +A+KGEEQE A K   E LK+LE AL  +P+FGG+  GF+DIA+     W    E     S  +AE  P   AW    ++   +   +P   ++LE  K  R+
Sbjct:    1 MANEEVILLDFWPSMFGMRLRIALAEKEIKYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFGNFS-TEAE-CPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQ 216          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.121e-43
Identity = 97/208 (46.63%), Postives = 127/208 (61.06%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQN-PLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKAAKA-RENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHEL 669
            M   +V LL +W S F +R++ AL LKG+ YE  EENL +KSPLLL  NPV+KKIP+L+HN K + ESL I+EYIDE W    PLLP DPYER+ ARFWA + D+K        ++ KGE+QE+A K   E LK LE  L  K +FGGD +GF+D+A+     W    E  A  S I+AE  P L  W    +E   +   +P  H++
Sbjct:    1 MESNNVVLLDFWPSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNSKAICESLNILEYIDEVWHDKCPLLPSDPYERSQARFWADYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFS-IEAE-CPKLVVWAKTCMESESVSKSLPHPHKI 206          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.912e-43
Identity = 95/208 (45.67%), Postives = 129/208 (62.02%), Query Frame = 1
Query:   67 VKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWK-----QNPLLPEDPYERANARFWAKFFDEKCVPEVMG-AFASKGEEQEKAAKAR--ENLKMLERAL----EGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIP 654
            +KLLG W+SP+A+RV+  L LK + YEYVEENL +KS LLL  NPV+K +PVL+H G+P+ ES +I++YIDE W      +  ++P DPYERA ARFWA + D+K  P  +   F SK EE+  AA A+    L+ LE A     +GKPFFGGD +GF+D+ +G    W   ++++ G  LID    P L AW   F      K  +P
Sbjct:    7 LKLLGVWSSPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVP 214          
The following BLAST results are available for this feature:
BLAST of FC876613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
GSTX2_TOBAC3.715e-5552.40Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_TOBAC4.852e-5552.88Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC8.276e-5552.40Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX6_SOYBN2.408e-5450.00Probable glutathione S-transferase OS=Glycine max ... [more]
GSTXA_ARATH1.615e-5049.10Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX1_SOLTU1.974e-4852.88Probable glutathione S-transferase OS=Solanum tube... [more]
GSTX4_TOBAC2.950e-4445.87Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXC_TOBAC3.853e-4445.41Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTXA_TOBAC1.121e-4346.63Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTU6_ORYSJ1.912e-4345.67Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DD05RM1 EHR Citrus clementina cDNA clone KN0AAN2DD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876613 ID=FC876613; Name=FC876613; organism=Citrus clementina; type=EST; length=888bp
GCACGAGGCATTTAGATATTATCACGCGCTGCTTTTGCTTGGCGAGCAAT
AATGGCTGAAGAAAGTGTGAAGTTGCTGGGTTACTGGGCAAGCCCCTTTG
CTCTTAGAGTTAAGTGGGCGCTCAAACTGAAGGGAGTTCACTACGAATAT
GTTGAAGAGAATCTCCCCAACAAGAGTCCCTTGCTGTTGCGATACAATCC
GGTTTATAAGAAGATTCCAGTTCTTGTACACAATGGGAAACCATTGGCAG
AATCACTACTGATCATCGAATACATTGATGAAGCGTGGAAACAAAATCCT
CTCCTCCCAGAAGATCCTTACGAACGGGCCAATGCACGTTTCTGGGCAAA
ATTCTTTGATGAGAAGTGTGTACCTGAAGTCATGGGAGCATTTGCCTCAA
AAGGGGAGGAACAAGAGAAAGCTGCAAAAGCTCGAGAGAATCTGAAGATG
CTGGAAAGGGCTCTGGAGGGGAAGCCCTTTTTTGGTGGTGACAAGATAGG
CTTTCTGGACATTGCTGTGGGGTGGATTGGAATCTGGGGTCGAATTGTTG
AGGAAATTGCAGGTGTCAGCCTGATTGATGCAGAGACGATGCCTTTGCTT
ACTGCTTGGTTGAACAATTTTCTTGAAGTTCCTGTTATCAAAGCATGCAT
ACCATCTTGGCACGAATTGCTTGAGCACAATAAAGGCTTCCGCAAGATCT
TGACAGGTTCATCAACTTGAAGTCTCTACCATCATCAGCGGTTGCCCATG
CATGAAGGTTTCTTAATATGATTTATAAATACTGCTTTTAGACTAAATAT
TATCATAAATAAGGCATGATCCTTCATAGGTTTGTATGAATGTCTTCTAG
ACTATATATATATCATATATGGTACATTATTGGTAACT
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